Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EJJ entry

There are 2 chains in PDB entry 5EJJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 12	ALA 574
B	ASN 12	ILE 575

There are 38 helices in PDB entry 5EJJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	31	Right-handed alpha
Helix 2	AA2	A	66	68	Right-handed 310
Helix 3	AA3	A	69	80	Right-handed alpha
Helix 4	AA4	A	109	116	Right-handed alpha
Helix 5	AA5	A	117	125	Right-handed alpha
Helix 6	AA6	A	154	168	Right-handed alpha
Helix 7	AA7	A	169	173	Right-handed 310
Helix 8	AA8	A	188	192	Right-handed 310
Helix 9	AA9	A	197	202	Right-handed alpha
Helix 10	AB1	A	263	292	Right-handed alpha
Helix 11	AB2	A	322	337	Right-handed alpha
Helix 12	AB3	A	347	351	Right-handed 310
Helix 13	AB4	A	369	374	Right-handed 310
Helix 14	AB5	A	406	421	Right-handed alpha
Helix 15	AB6	A	431	437	Right-handed alpha
Helix 16	AB7	A	457	469	Right-handed alpha
Helix 17	AB8	A	480	486	Right-handed 310
Helix 18	AB9	A	487	496	Right-handed alpha
Helix 19	AC1	A	540	545	Right-handed alpha
Helix 20	AC2	A	555	557	Right-handed 310
Helix 21	AC3	B	18	31	Right-handed alpha
Helix 22	AC4	B	66	68	Right-handed 310
Helix 23	AC5	B	69	78	Right-handed alpha
Helix 24	AC6	B	109	115	Right-handed alpha
Helix 25	AC7	B	117	125	Right-handed alpha
Helix 26	AC8	B	154	170	Right-handed alpha
Helix 27	AC9	B	188	192	Right-handed 310
Helix 28	AD1	B	197	202	Right-handed alpha
Helix 29	AD2	B	263	292	Right-handed alpha
Helix 30	AD3	B	322	337	Right-handed alpha
Helix 31	AD4	B	347	351	Right-handed 310
Helix 32	AD5	B	370	374	Right-handed 310
Helix 33	AD6	B	408	422	Right-handed alpha
Helix 34	AD7	B	431	440	Right-handed alpha
Helix 35	AD8	B	457	470	Right-handed alpha
Helix 36	AD9	B	484	486	Right-handed 310
Helix 37	AE1	B	487	498	Right-handed alpha
Helix 38	AE2	B	539	545	Right-handed alpha

There are 13 sheets in PDB entry 5EJJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	17	first strand
Strand 2	A	128	130	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	64	first strand
Strand 2	A	44	51	anti-parallel
Strand 3	A	85	92	anti-parallel
Strand 4	A	105	108	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	210	212	first strand
Strand 2	A	138	150	parallel
Strand 3	A	246	258	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	184	first strand
Strand 2	A	174	177	anti-parallel
Strand 3	A	214	216	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	300	304	first strand
Strand 2	A	313	317	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	510	518	anti-parallel
Strand 3	A	502	505	anti-parallel
Strand 4	A	563	568	anti-parallel
Strand 5	A	473	478	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	382	385	first strand
Strand 2	A	510	518	anti-parallel
Strand 3	A	525	530	anti-parallel
Strand 4	A	549	553	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	17	first strand
Strand 2	B	128	130	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	56	64	first strand
Strand 2	B	44	51	anti-parallel
Strand 3	B	85	92	anti-parallel
Strand 4	B	104	108	parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	185	first strand
Strand 2	B	173	177	anti-parallel
Strand 3	B	210	217	anti-parallel
Strand 4	B	138	150	parallel
Strand 5	B	246	258	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	299	304	first strand
Strand 2	B	313	318	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	384	first strand
Strand 2	B	510	518	anti-parallel
Strand 3	B	502	505	anti-parallel
Strand 4	B	563	569	anti-parallel
Strand 5	B	472	478	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	384	first strand
Strand 2	B	510	518	anti-parallel
Strand 3	B	525	530	anti-parallel
Strand 4	B	551	553	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EJJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJJ