Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJL


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EJL entry

There is 1 chain in PDB entry 5EJL (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER -9ALA 228
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 4 helices in PDB entry 5EJL. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 23Right-handed alpha
Helix 2
AA2
A
152 156Right-handed 310
Helix 3
AA3
A
170 172Right-handed 310
Helix 4
AA4
A
210 228Right-handed alpha
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There are 3 sheets in PDB entry 5EJL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 7first strand
Strand 2
A
101 105anti-parallel
Strand 3
A
71 77anti-parallel
Strand 4
A
62 68anti-parallel
Strand 5
A
26 31anti-parallel
Strand 6
A
34 39anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 43first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
91 96anti-parallel
Strand 4
A
79 83anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 113first strand
Strand 2
A
131 139anti-parallel
Strand 3
A
143 148anti-parallel
Strand 4
A
196 207anti-parallel
Strand 5
A
174 190anti-parallel
Strand 6
A
161 168anti-parallel
Strand 7
A
121 125anti-parallel
Strand 8
A
131 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il