Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EJS entry

There are 2 chains in PDB entry 5EJS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1854HIS 2360
B
 GLN 1855LEU 2359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 5EJS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1854 1861Right-handed alpha
Helix 2
AA2
A
1864 1875Right-handed alpha
Helix 3
AA3
A
1887 1893Right-handed 310
Helix 4
AA4
A
1907 1925Right-handed alpha
Helix 5
AA5
A
1935 1950Right-handed alpha
Helix 6
AA6
A
1953 1964Right-handed alpha
Helix 7
AA7
A
1970 1988Right-handed alpha
Helix 8
AA8
A
1991 2010Right-handed alpha
Helix 9
AA9
A
2013 2029Right-handed alpha
Helix 10
AB1
A
2033 2037Right-handed 310
Helix 11
AB2
A
2043 2056Right-handed alpha
Helix 12
AB3
A
2081 2094Right-handed alpha
Helix 13
AB4
A
2096 2101Right-handed alpha
Helix 14
AB5
A
2123 2133Right-handed alpha
Helix 15
AB6
A
2152 2159Right-handed 310
Helix 16
AB7
A
2160 2165Right-handed alpha
Helix 17
AB8
A
2166 2183Right-handed alpha
Helix 18
AB9
A
2190 2206Right-handed alpha
Helix 19
AC1
A
2215 2220Right-handed alpha
Helix 20
AC2
A
2224 2229Right-handed alpha
Helix 21
AC3
A
2232 2246Right-handed alpha
Helix 22
AC4
A
2251 2267Right-handed alpha
Helix 23
AC5
A
2343 2356Right-handed alpha
Helix 24
AC6
B
1856 1861Right-handed alpha
Helix 25
AC7
B
1864 1869Right-handed alpha
Helix 26
AC8
B
1889 1893Right-handed 310
Helix 27
AC9
B
1907 1925Right-handed alpha
Helix 28
AD1
B
1935 1950Right-handed alpha
Helix 29
AD2
B
1953 1964Right-handed alpha
Helix 30
AD3
B
1970 1988Right-handed alpha
Helix 31
AD4
B
1991 2010Right-handed alpha
Helix 32
AD5
B
2013 2029Right-handed alpha
Helix 33
AD6
B
2033 2037Right-handed 310
Helix 34
AD7
B
2043 2056Right-handed alpha
Helix 35
AD8
B
2081 2094Right-handed alpha
Helix 36
AD9
B
2096 2101Right-handed alpha
Helix 37
AE1
B
2123 2133Right-handed alpha
Helix 38
AE2
B
2152 2159Right-handed 310
Helix 39
AE3
B
2160 2165Right-handed alpha
Helix 40
AE4
B
2166 2183Right-handed alpha
Helix 41
AE5
B
2190 2206Right-handed alpha
Helix 42
AE6
B
2215 2220Right-handed alpha
Helix 43
AE7
B
2224 2229Right-handed alpha
Helix 44
AE8
B
2232 2242Right-handed alpha
Helix 45
AE9
B
2244 2249Right-handed 310
Helix 46
AF1
B
2252 2268Right-handed alpha
Helix 47
AF2
B
2344 2357Right-handed alpha
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There are 6 sheets in PDB entry 5EJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2071 2075first strand
Strand 2
A
2061 2065anti-parallel
Strand 3
A
2140 2146parallel
Strand 4
A
2103 2109anti-parallel
Strand 5
A
2114 2118anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2273 2278first strand
Strand 2
A
2285 2290anti-parallel
Strand 3
A
2294 2298anti-parallel
Strand 4
A
2305 2310anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2316 2319first strand
Strand 2
A
2323 2327anti-parallel
Strand 3
A
2336 2340anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2071 2075first strand
Strand 2
B
2061 2065anti-parallel
Strand 3
B
2140 2146parallel
Strand 4
B
2103 2109anti-parallel
Strand 5
B
2114 2118anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2274 2279first strand
Strand 2
B
2286 2291anti-parallel
Strand 3
B
2295 2299anti-parallel
Strand 4
B
2306 2311anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2317 2320first strand
Strand 2
B
2324 2328anti-parallel
Strand 3
B
2337 2341anti-parallel
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