Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EJZ entry

There are 2 chains in PDB entry 5EJZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 13	ARG 740
B	PRO 54	VAL 634

There are 46 helices in PDB entry 5EJZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	13	25	Right-handed alpha
Helix 2	AA2	A	25	35	Right-handed alpha
Helix 3	AA3	A	38	57	Right-handed alpha
Helix 4	AA4	A	58	60	Right-handed 310
Helix 5	AA5	A	62	87	Right-handed alpha
Helix 6	AA6	A	95	121	Right-handed alpha
Helix 7	AA7	A	152	165	Right-handed alpha
Helix 8	AA8	A	191	213	Right-handed alpha
Helix 9	AA9	A	225	235	Right-handed alpha
Helix 10	AB1	A	260	265	Right-handed alpha
Helix 11	AB2	A	282	288	Right-handed alpha
Helix 12	AB3	A	298	304	Right-handed alpha
Helix 13	AB4	A	304	312	Right-handed alpha
Helix 14	AB5	A	326	331	Right-handed alpha
Helix 15	AB6	A	341	352	Right-handed alpha
Helix 16	AB7	A	372	394	Right-handed alpha
Helix 17	AB8	A	403	417	Right-handed alpha
Helix 18	AB9	A	418	437	Right-handed alpha
Helix 19	AC1	A	444	468	Right-handed alpha
Helix 20	AC2	A	474	497	Right-handed alpha
Helix 21	AC3	A	521	545	Right-handed alpha
Helix 22	AC4	A	548	570	Right-handed alpha
Helix 23	AC5	A	595	599	Right-handed 310
Helix 24	AC6	A	646	650	Right-handed 310
Helix 25	AC7	A	679	691	Right-handed alpha
Helix 26	AC8	A	693	702	Right-handed alpha
Helix 27	AC9	A	708	738	Right-handed alpha
Helix 28	AD1	B	88	92	Right-handed 310
Helix 29	AD2	B	107	111	Right-handed 310
Helix 30	AD3	B	192	205	Right-handed alpha
Helix 31	AD4	B	219	232	Right-handed alpha
Helix 32	AD5	B	292	299	Right-handed alpha
Helix 33	AD6	B	406	408	Right-handed 310
Helix 34	AD7	B	458	464	Right-handed alpha
Helix 35	AD8	B	467	469	Right-handed 310
Helix 36	AD9	B	475	477	Right-handed 310
Helix 37	AE1	B	478	483	Right-handed alpha
Helix 38	AE2	B	484	488	Right-handed 310
Helix 39	AE3	B	506	511	Right-handed 310
Helix 40	AE4	B	519	528	Right-handed alpha
Helix 41	AE5	B	569	594	Right-handed alpha
Helix 42	AE6	B	598	605	Right-handed alpha
Helix 43	AE7	B	630	640	Right-handed alpha
Helix 44	AE8	B	641	644	Right-handed 310
Helix 45	AE9	B	681	693	Right-handed alpha
Helix 46	AF1	B	693	719	Right-handed alpha

There are 13 sheets in PDB entry 5EJZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	217	first strand
Strand 2	A	173	179	parallel
Strand 3	A	142	148	parallel
Strand 4	A	241	244	parallel
Strand 5	A	322	325	anti-parallel
Strand 6	A	269	273	anti-parallel
Strand 7	A	356	359	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	250	251	first strand
Strand 2	A	365	366	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	516	517	first strand
Strand 2	A	574	575	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	585	594	first strand
Strand 2	A	603	610	anti-parallel
Strand 3	A	614	620	anti-parallel
Strand 4	A	666	673	anti-parallel
Strand 5	A	653	662	anti-parallel
Strand 6	A	636	641	anti-parallel
Strand 7	A	585	594	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	172	184	anti-parallel
Strand 3	B	71	75	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	55	57	first strand
Strand 2	B	172	184	anti-parallel
Strand 3	B	95	102	anti-parallel
Strand 4	B	134	139	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	60	61	first strand
Strand 2	B	80	87	anti-parallel
Strand 3	B	147	156	anti-parallel
Strand 4	B	112	117	anti-parallel
Strand 5	B	121	125	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	241	244	first strand
Strand 2	B	210	213	parallel
Strand 3	B	256	262	parallel
Strand 4	B	278	284	parallel
Strand 5	B	267	272	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	319	320	first strand
Strand 2	B	445	447	anti-parallel
Strand 3	B	355	360	anti-parallel
Strand 4	B	399	404	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	329	331	first strand
Strand 2	B	438	440	anti-parallel
Strand 3	B	362	364	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	335	344	first strand
Strand 2	B	411	420	anti-parallel
Strand 3	B	373	378	anti-parallel
Strand 4	B	381	387	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	454	455	first strand
Strand 2	B	672	673	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	471	473	first strand
Strand 2	B	499	504	parallel
Strand 3	B	620	625	parallel
Strand 4	B	611	617	anti-parallel
Strand 5	B	652	655	anti-parallel
Strand 6	B	661	664	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EJZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EJZ