Analysis of interatomic Contacts of Structural Units in PDB entry:
5EKE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EKE entry

There are 4 chains in PDB entry 5EKE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PHE -3PRO 313
B
 PHE -3LYS 316
C
 PHE -4LEU 314
D
 PHE -3LEU 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 55 helices in PDB entry 5EKE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 30Right-handed alpha
Helix 2
AA2
A
31 33Right-handed 310
Helix 3
AA3
A
48 60Right-handed alpha
Helix 4
AA4
A
73 84Right-handed alpha
Helix 5
AA5
A
102 113Right-handed alpha
Helix 6
AA6
A
163 169Right-handed alpha
Helix 7
AA7
A
172 180Right-handed 310
Helix 8
AA8
A
181 187Right-handed alpha
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
225 248Right-handed alpha
Helix 11
AB2
A
249 255Right-handed alpha
Helix 12
AB3
A
261 296Right-handed alpha
Helix 13
AB4
B
17 30Right-handed alpha
Helix 14
AB5
B
31 33Right-handed 310
Helix 15
AB6
B
48 59Right-handed alpha
Helix 16
AB7
B
73 84Right-handed alpha
Helix 17
AB8
B
100 102Right-handed 310
Helix 18
AB9
B
103 114Right-handed alpha
Helix 19
AC1
B
134 140Right-handed alpha
Helix 20
AC2
B
146 151Right-handed 310
Helix 21
AC3
B
163 169Right-handed alpha
Helix 22
AC4
B
172 176Right-handed 310
Helix 23
AC5
B
177 180Right-handed 310
Helix 24
AC6
B
181 187Right-handed alpha
Helix 25
AC7
B
208 223Right-handed alpha
Helix 26
AC8
B
225 250Right-handed alpha
Helix 27
AC9
B
262 296Right-handed alpha
Helix 28
AD1
C
16 29Right-handed alpha
Helix 29
AD2
C
30 32Right-handed 310
Helix 30
AD3
C
47 59Right-handed alpha
Helix 31
AD4
C
72 83Right-handed alpha
Helix 32
AD5
C
99 101Right-handed 310
Helix 33
AD6
C
102 113Right-handed alpha
Helix 34
AD7
C
128 139Right-handed alpha
Helix 35
AD8
C
143 149Right-handed 310
Helix 36
AD9
C
162 168Right-handed alpha
Helix 37
AE1
C
171 179Right-handed 310
Helix 38
AE2
C
180 186Right-handed alpha
Helix 39
AE3
C
208 222Right-handed alpha
Helix 40
AE4
C
224 250Right-handed alpha
Helix 41
AE5
C
262 296Right-handed alpha
Helix 42
AE6
D
17 30Right-handed alpha
Helix 43
AE7
D
31 33Right-handed 310
Helix 44
AE8
D
48 59Right-handed alpha
Helix 45
AE9
D
73 84Right-handed alpha
Helix 46
AF1
D
102 113Right-handed alpha
Helix 47
AF2
D
130 140Right-handed alpha
Helix 48
AF3
D
163 169Right-handed alpha
Helix 49
AF4
D
172 180Right-handed 310
Helix 50
AF5
D
181 187Right-handed alpha
Helix 51
AF6
D
208 213Right-handed alpha
Helix 52
AF7
D
213 223Right-handed alpha
Helix 53
AF8
D
225 246Right-handed alpha
Helix 54
AF9
D
247 251Right-handed 310
Helix 55
AG1
D
262 296Right-handed alpha
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There are 4 sheets in PDB entry 5EKE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 195first strand
Strand 2
A
117 122parallel
Strand 3
A
159 162anti-parallel
Strand 4
A
89 92anti-parallel
Strand 5
A
5 11parallel
Strand 6
A
36 42parallel
Strand 7
A
63 68parallel
Strand 8
A
303 307anti-parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
190 195first strand
Strand 2
B
117 122parallel
Strand 3
B
159 162anti-parallel
Strand 4
B
89 92anti-parallel
Strand 5
B
5 11parallel
Strand 6
B
36 42parallel
Strand 7
B
63 68parallel
Strand 8
B
303 307anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
189 194first strand
Strand 2
C
116 121parallel
Strand 3
C
158 161anti-parallel
Strand 4
C
88 91anti-parallel
Strand 5
C
4 10parallel
Strand 6
C
35 41parallel
Strand 7
C
62 67parallel
Strand 8
C
303 307anti-parallel
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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
190 195first strand
Strand 2
D
117 122parallel
Strand 3
D
159 162anti-parallel
Strand 4
D
89 92anti-parallel
Strand 5
D
5 11parallel
Strand 6
D
36 42parallel
Strand 7
D
63 68parallel
Strand 8
D
303 307anti-parallel
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