Analysis of interatomic Contacts of Structural Units in PDB entry:
5EKY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EKY entry

There is 1 chain in PDB entry 5EKY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 3GLY 251
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5EKY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
3 13Right-handed alpha
Helix 2
AA2
A
25 36Right-handed alpha
Helix 3
AA3
A
49 51Right-handed 310
Helix 4
AA4
A
52 63Right-handed alpha
Helix 5
AA5
A
82 97Right-handed alpha
Helix 6
AA6
A
106 112Right-handed alpha
Helix 7
AA7
A
115 132Right-handed alpha
Helix 8
AA8
A
141 146Right-handed alpha
Helix 9
AA9
A
147 161Right-handed alpha
Helix 10
AB1
A
178 192Right-handed alpha
Helix 11
AB2
A
208 224Right-handed alpha
Helix 12
AB3
A
239 248Right-handed alpha
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There are 2 sheets in PDB entry 5EKY. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
199 201first strand
Strand 2
A
165 167parallel
Strand 3
A
135 139parallel
Strand 4
A
100 104parallel
Strand 5
A
69 74parallel
Strand 6
A
45 47parallel
Strand 7
A
15 18parallel
Strand 8
A
235 237parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 38first strand
Strand 2
A
41 42anti-parallel
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