Analysis of interatomic Contacts of Structural Units in PDB entry:
5ELS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ELS entry

There are 7 chains in PDB entry 5ELS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 48ASN 160
B
 GLY 48ASN 160
C
 GLY 48ASN 160
D
 GLY 48ASP 158
E
 GLY 48PRO 157
F
 GLY 48TYR 159
H
 A -1 A 4
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 5ELS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
71 78Right-handed alpha
Helix 2
AA2
A
81 92Right-handed alpha
Helix 3
AA3
A
105 116Right-handed alpha
Helix 4
AA4
A
117 125Right-handed 310
Helix 5
AA5
A
136 150Right-handed alpha
Helix 6
AA6
A
151 156Right-handed 310
Helix 7
AA7
B
71 78Right-handed alpha
Helix 8
AA8
B
81 91Right-handed alpha
Helix 9
AA9
B
105 116Right-handed alpha
Helix 10
AB1
B
117 125Right-handed 310
Helix 11
AB2
B
136 152Right-handed alpha
Helix 12
AB3
B
153 155Right-handed 310
Helix 13
AB4
C
71 78Right-handed alpha
Helix 14
AB5
C
81 92Right-handed alpha
Helix 15
AB6
C
105 116Right-handed alpha
Helix 16
AB7
C
117 125Right-handed 310
Helix 17
AB8
C
136 151Right-handed alpha
Helix 18
AB9
C
152 156Right-handed 310
Helix 19
AC1
D
72 78Right-handed alpha
Helix 20
AC2
D
82 92Right-handed alpha
Helix 21
AC3
D
105 114Right-handed alpha
Helix 22
AC4
D
115 116Right-handed 310
Helix 23
AC5
D
117 125Right-handed 310
Helix 24
AC6
D
136 151Right-handed alpha
Helix 25
AC7
D
152 156Right-handed 310
Helix 26
AC8
E
71 78Right-handed alpha
Helix 27
AC9
E
81 92Right-handed alpha
Helix 28
AD1
E
106 114Right-handed alpha
Helix 29
AD2
E
117 125Right-handed 310
Helix 30
AD3
E
136 151Right-handed alpha
Helix 31
AD4
E
152 156Right-handed 310
Helix 32
AD5
F
72 78Right-handed alpha
Helix 33
AD6
F
84 89Right-handed alpha
Helix 34
AD7
F
105 116Right-handed alpha
Helix 35
AD8
F
117 125Right-handed 310
Helix 36
AD9
F
136 152Right-handed alpha
Helix 37
AE1
F
153 156Right-handed 310
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There are 6 sheets in PDB entry 5ELS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
54 61first strand
Strand 2
A
128 135anti-parallel
Strand 3
A
94 98anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
54 61first strand
Strand 2
B
128 135anti-parallel
Strand 3
B
94 98anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
54 61first strand
Strand 2
C
128 135anti-parallel
Strand 3
C
94 98anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
54 61first strand
Strand 2
D
128 135anti-parallel
Strand 3
D
94 98anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
54 61first strand
Strand 2
E
128 135anti-parallel
Strand 3
E
94 98anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
54 61first strand
Strand 2
F
128 135anti-parallel
Strand 3
F
97 98anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il