Analysis of interatomic Contacts of Structural Units in PDB entry:
5EMH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EMH entry

There is 1 chain in PDB entry 5EMH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 34PRO 395
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5EMH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
48 56Right-handed alpha
Helix 2
AA2
A
94 103Right-handed alpha
Helix 3
AA3
A
121 137Right-handed alpha
Helix 4
AA4
A
151 156Right-handed 310
Helix 5
AA5
A
183 199Right-handed alpha
Helix 6
AA6
A
221 236Right-handed alpha
Helix 7
AA7
A
245 251Right-handed alpha
Helix 8
AA8
A
258 271Right-handed alpha
Helix 9
AA9
A
272 275Right-handed 310
Helix 10
AB1
A
288 300Right-handed alpha
Helix 11
AB2
A
315 320Right-handed alpha
Helix 12
AB3
A
323 334Right-handed alpha
Helix 13
AB4
A
340 345Right-handed alpha
Helix 14
AB5
A
346 354Right-handed alpha
Helix 15
AB6
A
363 369Right-handed alpha
Helix 16
AB7
A
376 391Right-handed alpha
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There are 3 sheets in PDB entry 5EMH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 89first strand
Strand 2
A
66 72parallel
Strand 3
A
37 42parallel
Strand 4
A
110 113parallel
Strand 5
A
145 149parallel
Strand 6
A
202 208parallel
Strand 7
A
277 281parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 212first strand
Strand 2
A
255 257parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 241first strand
Strand 2
A
304 305parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il