Analysis of interatomic Contacts of Structural Units in PDB entry:
5EMI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EMI entry

There is 1 chain in PDB entry 5EMI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 435ARG 614
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 5EMI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
461 480Right-handed 310
Helix 2
AA2
A
495 506Right-handed alpha
Helix 3
AA3
A
536 551Right-handed alpha
Helix 4
AA4
A
564 569Right-handed alpha
Helix 5
AA5
A
586 592Right-handed alpha
Helix 6
AA6
A
593 613Right-handed alpha
Back to top of page

There is 1 sheet (AA1) in PDB entry 5EMI.

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
483 486first strand
Strand 2
A
440 445parallel
Strand 3
A
510 515parallel
Strand 4
A
574 578parallel
Strand 5
A
528 532anti-parallel
Strand 6
A
558 561parallel
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il