Analysis of interatomic Contacts of Structural Units in PDB entry:
5EMN

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EMN entry

There are 2 chains in PDB entry 5EMN (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 70	SER 680
B	SER 70	SER 680

There are 48 helices in PDB entry 5EMN. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	71	79	Right-handed alpha
Helix 2	AA2	A	92	105	Right-handed alpha
Helix 3	AA3	A	106	109	Right-handed 310
Helix 4	AA4	A	116	120	Right-handed 310
Helix 5	AA5	A	121	131	Right-handed 310
Helix 6	AA6	A	152	162	Right-handed alpha
Helix 7	AA7	A	185	198	Right-handed alpha
Helix 8	AA8	A	214	235	Right-handed alpha
Helix 9	AA9	A	257	261	Right-handed 310
Helix 10	AB1	A	330	341	Right-handed alpha
Helix 11	AB2	A	370	377	Right-handed alpha
Helix 12	AB3	A	385	394	Right-handed alpha
Helix 13	AB4	A	398	408	Right-handed alpha
Helix 14	AB5	A	412	423	Right-handed alpha
Helix 15	AB6	A	429	436	Right-handed alpha
Helix 16	AB7	A	443	451	Right-handed alpha
Helix 17	AB8	A	491	499	Right-handed alpha
Helix 18	AB9	A	536	539	Right-handed 310
Helix 19	AC1	A	540	556	Right-handed alpha
Helix 20	AC2	A	578	588	Right-handed alpha
Helix 21	AC3	A	607	615	Right-handed alpha
Helix 22	AC4	A	615	626	Right-handed alpha
Helix 23	AC5	A	637	655	Right-handed alpha
Helix 24	AC6	A	657	671	Right-handed alpha
Helix 25	AC7	B	71	79	Right-handed alpha
Helix 26	AC8	B	92	105	Right-handed alpha
Helix 27	AC9	B	106	109	Right-handed 310
Helix 28	AD1	B	116	120	Right-handed 310
Helix 29	AD2	B	121	131	Right-handed 310
Helix 30	AD3	B	152	162	Right-handed alpha
Helix 31	AD4	B	185	198	Right-handed alpha
Helix 32	AD5	B	214	235	Right-handed alpha
Helix 33	AD6	B	257	261	Right-handed 310
Helix 34	AD7	B	330	342	Right-handed alpha
Helix 35	AD8	B	370	377	Right-handed alpha
Helix 36	AD9	B	385	394	Right-handed alpha
Helix 37	AE1	B	398	408	Right-handed alpha
Helix 38	AE2	B	413	423	Right-handed alpha
Helix 39	AE3	B	429	436	Right-handed alpha
Helix 40	AE4	B	443	451	Right-handed alpha
Helix 41	AE5	B	491	499	Right-handed alpha
Helix 42	AE6	B	536	539	Right-handed 310
Helix 43	AE7	B	540	556	Right-handed alpha
Helix 44	AE8	B	578	588	Right-handed alpha
Helix 45	AE9	B	607	615	Right-handed alpha
Helix 46	AF1	B	615	625	Right-handed alpha
Helix 47	AF2	B	637	654	Right-handed alpha
Helix 48	AF3	B	657	671	Right-handed alpha

There are 14 sheets in PDB entry 5EMN. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	83	88	parallel
Strand 3	A	135	143	parallel
Strand 4	A	147	148	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	115	first strand
Strand 2	A	83	88	parallel
Strand 3	A	135	143	parallel
Strand 4	A	170	177	parallel
Strand 5	A	201	210	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	248	252	first strand
Strand 2	A	348	353	anti-parallel
Strand 3	A	368	369	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	294	first strand
Strand 2	A	303	309	anti-parallel
Strand 3	A	471	477	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	460	first strand
Strand 2	A	322	325	anti-parallel
Strand 3	A	514	517	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	482	first strand
Strand 2	A	488	490	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	598	first strand
Strand 2	A	563	569	parallel
Strand 3	A	531	534	parallel
Strand 4	A	628	634	parallel
Strand 5	A	674	679	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	115	first strand
Strand 2	B	83	88	parallel
Strand 3	B	135	143	parallel
Strand 4	B	170	177	parallel
Strand 5	B	201	202	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	147	148	first strand
Strand 2	B	135	143	anti-parallel
Strand 3	B	170	177	parallel
Strand 4	B	207	210	parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	248	252	first strand
Strand 2	B	348	353	anti-parallel
Strand 3	B	368	369	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	288	294	first strand
Strand 2	B	303	309	anti-parallel
Strand 3	B	471	477	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	460	first strand
Strand 2	B	322	325	anti-parallel
Strand 3	B	514	517	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	482	first strand
Strand 2	B	488	490	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	598	first strand
Strand 2	B	563	569	parallel
Strand 3	B	531	534	parallel
Strand 4	B	628	634	parallel
Strand 5	B	674	679	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EMN

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EMN