Analysis of interatomic Contacts of Structural Units in PDB entry:
5END


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5END entry

There are 2 chains in PDB entry 5END (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3TYR 246
B
 SER 2TYR 246
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5END. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 32Right-handed alpha
Helix 2
AA2
A
42 54Right-handed alpha
Helix 3
AA3
A
66 81Right-handed alpha
Helix 4
AA4
A
103 115Right-handed alpha
Helix 5
AA5
A
115 132Right-handed alpha
Helix 6
AA6
A
153 174Right-handed alpha
Helix 7
AA7
A
190 196Right-handed alpha
Helix 8
AA8
A
197 207Right-handed alpha
Helix 9
AA9
A
215 228Right-handed alpha
Helix 10
AB1
A
229 232Right-handed 310
Helix 11
AB2
B
19 32Right-handed alpha
Helix 12
AB3
B
42 54Right-handed alpha
Helix 13
AB4
B
66 81Right-handed alpha
Helix 14
AB5
B
104 115Right-handed alpha
Helix 15
AB6
B
115 132Right-handed alpha
Helix 16
AB7
B
154 174Right-handed alpha
Helix 17
AB8
B
191 196Right-handed 310
Helix 18
AB9
B
197 206Right-handed alpha
Helix 19
AC1
B
215 228Right-handed alpha
Helix 20
AC2
B
229 232Right-handed 310
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There are 2 sheets in PDB entry 5END. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
35 40parallel
Strand 3
A
11 14parallel
Strand 4
A
86 90parallel
Strand 5
A
135 140parallel
Strand 6
A
178 185parallel
Strand 7
A
238 241parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 61first strand
Strand 2
B
35 40parallel
Strand 3
B
11 14parallel
Strand 4
B
86 89parallel
Strand 5
B
135 140parallel
Strand 6
B
178 185parallel
Strand 7
B
238 241parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il