Analysis of interatomic Contacts of Structural Units in PDB entry:
5EO6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EO6 entry

There are 2 chains in PDB entry 5EO6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 312
B
 GLN 2GLU 313
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 25 helices in PDB entry 5EO6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
5 34Right-handed alpha
Helix 2
AA2
A
80 87Right-handed alpha
Helix 3
AA3
A
88 91Right-handed 310
Helix 4
AA4
A
146 162Right-handed alpha
Helix 5
AA5
A
163 165Right-handed 310
Helix 6
AA6
A
167 180Right-handed alpha
Helix 7
AA7
A
183 186Right-handed 310
Helix 8
AA8
A
203 230Right-handed alpha
Helix 9
AA9
A
235 256Right-handed alpha
Helix 10
AB1
A
257 266Right-handed alpha
Helix 11
AB2
A
269 274Right-handed alpha
Helix 12
AB3
A
275 277Right-handed 310
Helix 13
AB4
A
293 301Right-handed alpha
Helix 14
AB5
B
5 34Right-handed alpha
Helix 15
AB6
B
80 87Right-handed alpha
Helix 16
AB7
B
88 91Right-handed 310
Helix 17
AB8
B
146 162Right-handed alpha
Helix 18
AB9
B
163 165Right-handed 310
Helix 19
AC1
B
167 180Right-handed alpha
Helix 20
AC2
B
203 230Right-handed alpha
Helix 21
AC3
B
235 256Right-handed alpha
Helix 22
AC4
B
257 266Right-handed alpha
Helix 23
AC5
B
269 274Right-handed alpha
Helix 24
AC6
B
275 277Right-handed 310
Helix 25
AC7
B
293 301Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 5EO6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 46first strand
Strand 2
A
51 59anti-parallel
Strand 3
A
64 76anti-parallel
Strand 4
A
94 106anti-parallel
Strand 5
A
113 124anti-parallel
Strand 6
A
131 141anti-parallel
Strand 7
A
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
181 182first strand
Strand 2
A
187 188anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
280 282first strand
Strand 2
B
280 282anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 46first strand
Strand 2
B
51 59anti-parallel
Strand 3
B
64 76anti-parallel
Strand 4
B
94 106anti-parallel
Strand 5
B
113 124anti-parallel
Strand 6
B
131 141anti-parallel
Strand 7
B
192 199anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
181 182first strand
Strand 2
B
187 188anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il