Analysis of interatomic Contacts of Structural Units in PDB entry:
5EO7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EO7 entry

There are 3 chains in PDB entry 5EO7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 2	GLU 311
B	SER 2	GLU 311
C	SER 2	ASP 30

There are 7 helices in PDB entry 5EO7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	48	50	Right-handed 310
Helix 3	AA3	A	98	103	Right-handed 310
Helix 4	AA4	B	5	9	Right-handed 310
Helix 5	AA5	B	98	103	Right-handed 310
Helix 6	AA6	C	5	9	Right-handed 310
Helix 7	AA7	C	98	103	Right-handed 310

There are 24 sheets in PDB entry 5EO7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	23	29	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	44	46	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	15	20	first strand
Strand 2	A	23	29	anti-parallel
Strand 3	A	34	40	anti-parallel
Strand 4	A	52	55	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	63	67	first strand
Strand 2	A	71	77	anti-parallel
Strand 3	A	83	89	anti-parallel
Strand 4	A	93	96	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	112	116	first strand
Strand 2	A	125	130	anti-parallel
Strand 3	A	135	141	anti-parallel
Strand 4	A	146	154	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	187	193	anti-parallel
Strand 4	A	197	198	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	161	166	first strand
Strand 2	A	175	181	anti-parallel
Strand 3	A	187	193	anti-parallel
Strand 4	A	203	206	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	215	220	first strand
Strand 2	A	228	234	anti-parallel
Strand 3	A	239	245	anti-parallel
Strand 4	A	251	259	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	267	271	first strand
Strand 2	A	275	280	anti-parallel
Strand 3	A	290	295	anti-parallel
Strand 4	A	299	302	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	44	46	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	20	first strand
Strand 2	B	23	29	anti-parallel
Strand 3	B	34	40	anti-parallel
Strand 4	B	52	55	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	67	first strand
Strand 2	B	71	77	anti-parallel
Strand 3	B	83	89	anti-parallel
Strand 4	B	93	96	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	112	116	first strand
Strand 2	B	125	130	anti-parallel
Strand 3	B	135	141	anti-parallel
Strand 4	B	147	154	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	187	193	anti-parallel
Strand 4	B	197	198	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	162	166	first strand
Strand 2	B	175	181	anti-parallel
Strand 3	B	187	193	anti-parallel
Strand 4	B	203	206	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	215	220	first strand
Strand 2	B	228	234	anti-parallel
Strand 3	B	239	245	anti-parallel
Strand 4	B	251	259	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	267	271	first strand
Strand 2	B	275	280	anti-parallel
Strand 3	B	290	295	anti-parallel
Strand 4	B	299	302	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	20	first strand
Strand 2	C	23	29	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	44	46	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	15	20	first strand
Strand 2	C	23	29	anti-parallel
Strand 3	C	34	40	anti-parallel
Strand 4	C	52	55	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	67	first strand
Strand 2	C	71	77	anti-parallel
Strand 3	C	83	89	anti-parallel
Strand 4	C	93	96	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	112	116	first strand
Strand 2	C	125	130	anti-parallel
Strand 3	C	135	141	anti-parallel
Strand 4	C	146	154	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	175	181	anti-parallel
Strand 3	C	187	193	anti-parallel
Strand 4	C	197	198	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	161	166	first strand
Strand 2	C	175	181	anti-parallel
Strand 3	C	187	193	anti-parallel
Strand 4	C	203	206	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	215	220	first strand
Strand 2	C	228	234	anti-parallel
Strand 3	C	239	245	anti-parallel
Strand 4	C	251	259	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	267	271	first strand
Strand 2	C	275	280	anti-parallel
Strand 3	C	290	295	anti-parallel
Strand 4	C	299	302	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EO7

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EO7