Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EOC entry

There are 6 chains in PDB entry 5EOC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
H	GLU 1	ARG 217
L	ASN 1	ASN 216
J	VAL 2	ARG 217
M	ASN 1	ASN 216
P	CYS 411	CYS 423
Q	CYS 411	CYS 423

There are 17 helices in PDB entry 5EOC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	H	62	65	Right-handed 310
Helix 2	AA2	H	74	76	Right-handed 310
Helix 3	AA3	H	87	91	Right-handed 310
Helix 4	AA4	H	160	162	Right-handed 310
Helix 5	AA5	H	190	192	Right-handed 310
Helix 6	AA6	H	204	207	Right-handed 310
Helix 7	AA7	L	83	87	Right-handed 310
Helix 8	AA8	L	125	130	Right-handed alpha
Helix 9	AA9	L	187	193	Right-handed alpha
Helix 10	AB1	J	62	65	Right-handed 310
Helix 11	AB2	J	87	91	Right-handed 310
Helix 12	AB3	J	160	162	Right-handed 310
Helix 13	AB4	J	190	192	Right-handed 310
Helix 14	AB5	J	204	207	Right-handed 310
Helix 15	AB6	M	83	87	Right-handed 310
Helix 16	AB7	M	125	130	Right-handed alpha
Helix 17	AB8	M	187	192	Right-handed alpha

There are 24 sheets in PDB entry 5EOC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	5	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	46	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	9	12	first strand
Strand 2	H	113	117	parallel
Strand 3	H	92	99	anti-parallel
Strand 4	H	106	109	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	167	169	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	126	130	first strand
Strand 2	H	139	149	anti-parallel
Strand 3	H	179	188	anti-parallel
Strand 4	H	173	174	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	155	158	first strand
Strand 2	H	198	203	anti-parallel
Strand 3	H	208	213	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	7	first strand
Strand 2	L	19	25	anti-parallel
Strand 3	L	74	79	anti-parallel
Strand 4	L	66	71	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	14	first strand
Strand 2	L	106	111	parallel
Strand 3	L	88	94	anti-parallel
Strand 4	L	37	42	anti-parallel
Strand 5	L	49	53	anti-parallel
Strand 6	L	57	58	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	30	31	first strand
Strand 2	L	34	35	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	118	122	first strand
Strand 2	L	133	143	anti-parallel
Strand 3	L	177	186	anti-parallel
Strand 4	L	163	167	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	157	159	first strand
Strand 2	L	149	154	anti-parallel
Strand 3	L	195	201	anti-parallel
Strand 4	L	209	214	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	3	5	first strand
Strand 2	J	18	25	anti-parallel
Strand 3	J	78	83	anti-parallel
Strand 4	J	68	73	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	34	39	anti-parallel
Strand 5	J	46	51	anti-parallel
Strand 6	J	58	60	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	9	12	first strand
Strand 2	J	113	117	parallel
Strand 3	J	92	99	anti-parallel
Strand 4	J	106	109	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	130	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	178	188	anti-parallel
Strand 4	J	167	169	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	126	130	first strand
Strand 2	J	139	149	anti-parallel
Strand 3	J	178	188	anti-parallel
Strand 4	J	173	175	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	155	158	first strand
Strand 2	J	198	203	anti-parallel
Strand 3	J	208	213	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	4	7	first strand
Strand 2	M	18	25	anti-parallel
Strand 3	M	74	79	anti-parallel
Strand 4	M	67	70	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	106	111	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	35	42	anti-parallel
Strand 5	M	49	54	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	10	14	first strand
Strand 2	M	106	111	parallel
Strand 3	M	88	94	anti-parallel
Strand 4	M	101	102	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	118	122	first strand
Strand 2	M	133	143	anti-parallel
Strand 3	M	177	186	anti-parallel
Strand 4	M	163	167	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	M	157	159	first strand
Strand 2	M	149	154	anti-parallel
Strand 3	M	195	201	anti-parallel
Strand 4	M	209	214	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	412	414	first strand
Strand 2	P	420	422	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	412	415	first strand
Strand 2	Q	419	422	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EOC

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOC