Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EOD entry

There are 2 chains in PDB entry 5EOD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 CYS 2GLN 605
B
 GLU 0PRO 5
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5EOD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 35Right-handed alpha
Helix 2
AA2
A
51 55Right-handed 310
Helix 3
AA3
A
82 85Right-handed 310
Helix 4
AA4
A
114 125Right-handed alpha
Helix 5
AA5
A
172 176Right-handed 310
Helix 6
AA6
A
204 215Right-handed alpha
Helix 7
AA7
A
230 234Right-handed 310
Helix 8
AA8
A
262 266Right-handed 310
Helix 9
AA9
A
295 305Right-handed alpha
Helix 10
AB1
A
355 359Right-handed 310
Helix 11
AB2
A
360 364Right-handed 310
Helix 12
AB3
A
412 416Right-handed 310
Helix 13
AB4
A
420 422Right-handed 310
Helix 14
AB5
A
432 436Right-handed 310
Helix 15
AB6
A
485 491Right-handed 310
Helix 16
AB7
A
523 531Right-handed alpha
Helix 17
AB8
A
596 603Right-handed alpha
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There are 8 sheets in PDB entry 5EOD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 12first strand
Strand 2
A
70 72anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 21first strand
Strand 2
A
57 61anti-parallel
Strand 3
A
40 44anti-parallel
Strand 4
A
76 80anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
96 103first strand
Strand 2
A
159 170anti-parallel
Strand 3
A
130 134anti-parallel
Strand 4
A
146 151anti-parallel
Strand 5
A
105 111anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
190 192first strand
Strand 2
A
250 252anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
195 201first strand
Strand 2
A
236 241anti-parallel
Strand 3
A
220 224anti-parallel
Strand 4
A
256 260anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 284first strand
Strand 2
A
340 351anti-parallel
Strand 3
A
311 315anti-parallel
Strand 4
A
326 332anti-parallel
Strand 5
A
286 293anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
384 389anti-parallel
Strand 3
A
395 402anti-parallel
Strand 4
A
407 410anti-parallel
Strand 5
A
464 468anti-parallel
Strand 6
A
445 450anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
515 519first strand
Strand 2
A
496 500anti-parallel
Strand 3
A
560 565anti-parallel
Strand 4
A
568 576anti-parallel
Strand 5
A
588 592anti-parallel
Strand 6
A
540 543anti-parallel
Strand 7
A
521 522anti-parallel
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