Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EOM entry

There are 4 chains in PDB entry 5EOM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 1	LEU 359
B	GLY -2	LEU 359
D	ALA -1	LEU 359
E	ASP 1	ALA 205

There are132 helices in PDB entry 5EOM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	1	49	Right-handed alpha
Helix 2	AA2	A	113	117	Right-handed 310
Helix 3	AA3	A	124	143	Right-handed alpha
Helix 4	AA4	A	145	147	Right-handed 310
Helix 5	AA5	A	181	185	Right-handed 310
Helix 6	AA6	A	196	206	Right-handed alpha
Helix 7	AA7	A	234	242	Right-handed alpha
Helix 8	AA8	A	246	262	Right-handed alpha
Helix 9	AA9	A	270	285	Right-handed alpha
Helix 10	AB1	A	287	294	Right-handed 310
Helix 11	AB2	A	295	313	Right-handed alpha
Helix 12	AB3	A	331	352	Right-handed alpha
Helix 13	AB4	A	353	359	Right-handed 310
Helix 14	AB5	B	-1	49	Right-handed alpha
Helix 15	AB6	B	50	53	Right-handed 310
Helix 16	AB7	B	113	117	Right-handed 310
Helix 17	AB8	B	124	143	Right-handed alpha
Helix 18	AB9	B	181	185	Right-handed 310
Helix 19	AC1	B	196	206	Right-handed alpha
Helix 20	AC2	B	234	242	Right-handed alpha
Helix 21	AC3	B	246	262	Right-handed alpha
Helix 22	AC4	B	270	285	Right-handed alpha
Helix 23	AC5	B	287	294	Right-handed 310
Helix 24	AC6	B	295	313	Right-handed alpha
Helix 25	AC7	B	331	352	Right-handed alpha
Helix 26	AC8	B	353	359	Right-handed 310
Helix 27	AC9	D	0	49	Right-handed alpha
Helix 28	AD1	D	106	111	Right-handed alpha
Helix 29	AD2	D	113	117	Right-handed 310
Helix 30	AD3	D	124	143	Right-handed alpha
Helix 31	AD4	D	145	147	Right-handed 310
Helix 32	AD5	D	181	185	Right-handed 310
Helix 33	AD6	D	198	206	Right-handed alpha
Helix 34	AD7	D	234	242	Right-handed alpha
Helix 35	AD8	D	246	262	Right-handed alpha
Helix 36	AD9	D	270	285	Right-handed alpha
Helix 37	AE1	D	287	294	Right-handed 310
Helix 38	AE2	D	295	314	Right-handed alpha
Helix 39	AE3	D	331	352	Right-handed alpha
Helix 40	AE4	D	353	359	Right-handed 310
Helix 41	AE5	E	2	49	Right-handed alpha
Helix 42	AE6	E	107	111	Right-handed 310
Helix 43	AE7	E	113	117	Right-handed 310
Helix 44	AE8	E	124	143	Right-handed alpha
Helix 45	AE9	E	145	147	Right-handed 310
Helix 46	AF1	E	181	185	Right-handed 310
Helix 47	AF2	E	196	206	Right-handed alpha
Helix 48	AF3	E	234	242	Right-handed alpha
Helix 49	AF4	E	246	262	Right-handed alpha
Helix 50	AF5	E	270	285	Right-handed alpha
Helix 51	AF6	E	287	294	Right-handed 310
Helix 52	AF7	E	295	313	Right-handed alpha
Helix 53	AF8	E	331	352	Right-handed alpha
Helix 54	AF9	E	353	358	Right-handed 310
Helix 55	AG1	F	-1	49	Right-handed alpha
Helix 56	AG2	F	50	53	Right-handed 310
Helix 57	AG3	F	113	117	Right-handed 310
Helix 58	AG4	F	124	143	Right-handed alpha
Helix 59	AG5	F	196	206	Right-handed alpha
Helix 60	AG6	F	234	242	Right-handed alpha
Helix 61	AG7	F	246	262	Right-handed alpha
Helix 62	AG8	F	270	285	Right-handed alpha
Helix 63	AG9	F	288	294	Right-handed 310
Helix 64	AH1	F	295	313	Right-handed alpha
Helix 65	AH2	F	331	352	Right-handed alpha
Helix 66	AH3	F	353	359	Right-handed 310
Helix 67	AH4	G	-1	49	Right-handed alpha
Helix 68	AH5	G	104	109	Right-handed 310
Helix 69	AH6	G	113	117	Right-handed 310
Helix 70	AH7	G	124	143	Right-handed alpha
Helix 71	AH8	G	181	185	Right-handed 310
Helix 72	AH9	G	196	206	Right-handed alpha
Helix 73	AI1	G	234	242	Right-handed alpha
Helix 74	AI2	G	246	262	Right-handed alpha
Helix 75	AI3	G	270	285	Right-handed alpha
Helix 76	AI4	G	287	294	Right-handed 310
Helix 77	AI5	G	295	314	Right-handed alpha
Helix 78	AI6	G	331	352	Right-handed alpha
Helix 79	AI7	G	353	359	Right-handed 310
Helix 80	AI8	H	-1	49	Right-handed alpha
Helix 81	AI9	H	113	117	Right-handed 310
Helix 82	AJ1	H	124	143	Right-handed alpha
Helix 83	AJ2	H	145	147	Right-handed 310
Helix 84	AJ3	H	181	185	Right-handed 310
Helix 85	AJ4	H	196	206	Right-handed alpha
Helix 86	AJ5	H	234	242	Right-handed alpha
Helix 87	AJ6	H	246	262	Right-handed alpha
Helix 88	AJ7	H	270	285	Right-handed alpha
Helix 89	AJ8	H	287	294	Right-handed 310
Helix 90	AJ9	H	295	313	Right-handed alpha
Helix 91	AK1	H	331	352	Right-handed alpha
Helix 92	AK2	H	353	359	Right-handed 310
Helix 93	AK3	I	2	49	Right-handed alpha
Helix 94	AK4	I	104	109	Right-handed 310
Helix 95	AK5	I	113	117	Right-handed 310
Helix 96	AK6	I	124	143	Right-handed alpha
Helix 97	AK7	I	144	147	Right-handed 310
Helix 98	AK8	I	181	185	Right-handed 310
Helix 99	AK9	I	196	206	Right-handed alpha
Helix 100	AL1	I	234	242	Right-handed alpha
Helix 101	AL2	I	246	262	Right-handed alpha
Helix 102	AL3	I	270	285	Right-handed alpha
Helix 103	AL4	I	287	294	Right-handed 310
Helix 104	AL5	I	295	313	Right-handed alpha
Helix 105	AL6	I	331	352	Right-handed alpha
Helix 106	AL7	I	353	359	Right-handed 310
Helix 107	AL8	J	0	30	Right-handed alpha
Helix 108	AL9	J	37	42	Right-handed alpha
Helix 109	AM1	J	124	137	Right-handed alpha
Helix 110	AM2	J	197	207	Right-handed alpha
Helix 111	AM3	J	236	242	Right-handed alpha
Helix 112	AM4	J	246	262	Right-handed alpha
Helix 113	AM5	J	270	285	Right-handed alpha
Helix 114	AM6	J	287	291	Right-handed 310
Helix 115	AM7	J	292	294	Right-handed 310
Helix 116	AM8	J	295	314	Right-handed alpha
Helix 117	AM9	J	331	352	Right-handed alpha
Helix 118	AN1	J	353	359	Right-handed 310
Helix 119	AN2	C	-1	49	Right-handed alpha
Helix 120	AN3	C	104	109	Right-handed 310
Helix 121	AN4	C	113	117	Right-handed 310
Helix 122	AN5	C	124	140	Right-handed alpha
Helix 123	AN6	C	145	147	Right-handed 310
Helix 124	AN7	C	181	185	Right-handed 310
Helix 125	AN8	C	196	206	Right-handed alpha
Helix 126	AN9	C	234	242	Right-handed alpha
Helix 127	AO1	C	246	262	Right-handed alpha
Helix 128	AO2	C	270	285	Right-handed alpha
Helix 129	AO3	C	287	294	Right-handed 310
Helix 130	AO4	C	295	314	Right-handed alpha
Helix 131	AO5	C	331	352	Right-handed alpha
Helix 132	AO6	C	353	359	Right-handed 310

There are 24 sheets in PDB entry 5EOM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	166	176	parallel
Strand 4	A	208	211	anti-parallel
Strand 5	A	230	233	anti-parallel
Strand 6	A	97	102	anti-parallel
Strand 7	A	86	89	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	66	70	first strand
Strand 2	A	73	79	anti-parallel
Strand 3	A	166	176	parallel
Strand 4	A	159	162	anti-parallel
Strand 5	A	149	151	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	62	63	anti-parallel

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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	166	176	parallel
Strand 4	B	208	211	anti-parallel
Strand 5	B	230	233	anti-parallel
Strand 6	B	97	101	anti-parallel
Strand 7	B	87	89	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	66	70	first strand
Strand 2	B	73	79	anti-parallel
Strand 3	B	166	176	parallel
Strand 4	B	159	162	anti-parallel
Strand 5	B	149	151	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	66	70	first strand
Strand 2	D	73	79	anti-parallel
Strand 3	D	166	176	parallel
Strand 4	D	208	211	anti-parallel
Strand 5	D	230	233	anti-parallel
Strand 6	D	97	102	anti-parallel
Strand 7	D	122	123	anti-parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	89	first strand
Strand 2	D	97	102	anti-parallel
Strand 3	D	230	233	anti-parallel
Strand 4	D	208	211	anti-parallel
Strand 5	D	166	176	anti-parallel
Strand 6	D	158	162	anti-parallel
Strand 7	D	149	151	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	73	79	anti-parallel
Strand 3	E	166	176	parallel
Strand 4	E	208	211	anti-parallel
Strand 5	E	230	233	anti-parallel
Strand 6	E	97	102	anti-parallel
Strand 7	E	86	89	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	66	70	first strand
Strand 2	E	73	79	anti-parallel
Strand 3	E	166	176	parallel
Strand 4	E	159	162	anti-parallel
Strand 5	E	149	151	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	73	79	anti-parallel
Strand 3	F	166	176	parallel
Strand 4	F	208	211	anti-parallel
Strand 5	F	230	233	anti-parallel
Strand 6	F	97	98	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	66	70	first strand
Strand 2	F	73	79	anti-parallel
Strand 3	F	166	176	parallel
Strand 4	F	158	162	anti-parallel
Strand 5	F	149	151	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	58	59	first strand
Strand 2	G	62	63	anti-parallel

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There are 7 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	70	first strand
Strand 2	G	73	79	anti-parallel
Strand 3	G	166	176	parallel
Strand 4	G	208	211	anti-parallel
Strand 5	G	230	233	anti-parallel
Strand 6	G	97	102	anti-parallel
Strand 7	G	86	89	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	66	70	first strand
Strand 2	G	73	79	anti-parallel
Strand 3	G	166	176	parallel
Strand 4	G	158	162	anti-parallel
Strand 5	G	149	152	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	58	59	first strand
Strand 2	H	62	63	anti-parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	70	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	166	176	parallel
Strand 4	H	208	211	anti-parallel
Strand 5	H	230	233	anti-parallel
Strand 6	H	97	101	anti-parallel
Strand 7	H	87	89	anti-parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	66	70	first strand
Strand 2	H	73	79	anti-parallel
Strand 3	H	166	176	parallel
Strand 4	H	158	162	anti-parallel
Strand 5	H	149	151	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	70	first strand
Strand 2	I	73	79	anti-parallel
Strand 3	I	166	176	parallel
Strand 4	I	208	211	anti-parallel
Strand 5	I	230	233	anti-parallel
Strand 6	I	97	102	anti-parallel
Strand 7	I	86	89	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	66	70	first strand
Strand 2	I	73	79	anti-parallel
Strand 3	I	166	176	parallel
Strand 4	I	159	162	anti-parallel
Strand 5	I	149	151	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	66	70	first strand
Strand 2	J	73	79	anti-parallel
Strand 3	J	166	173	parallel
Strand 4	J	159	162	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	J	209	211	first strand
Strand 2	J	231	233	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	62	63	anti-parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	166	176	parallel
Strand 4	C	208	211	anti-parallel
Strand 5	C	230	233	anti-parallel
Strand 6	C	97	102	anti-parallel
Strand 7	C	86	89	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	70	first strand
Strand 2	C	73	79	anti-parallel
Strand 3	C	166	176	parallel
Strand 4	C	159	162	anti-parallel
Strand 5	C	149	151	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EOM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOM