Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EOO entry

There are 4 chains in PDB entry 5EOO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 21	HIS 283
B	ASP 21	VAL 281
C	ASP 21	VAL 281
D	ASP 21	VAL 281

There are 51 helices in PDB entry 5EOO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	21	34	Right-handed alpha
Helix 2	AA2	A	61	63	Right-handed 310
Helix 3	AA3	A	64	78	Right-handed alpha
Helix 4	AA4	A	90	94	Right-handed 310
Helix 5	AA5	A	98	105	Right-handed alpha
Helix 6	AA6	A	112	122	Right-handed alpha
Helix 7	AA7	A	124	136	Right-handed alpha
Helix 8	AA8	A	137	148	Right-handed alpha
Helix 9	AA9	A	160	164	Right-handed 310
Helix 10	AB1	A	175	189	Right-handed alpha
Helix 11	AB2	A	193	206	Right-handed alpha
Helix 12	AB3	A	213	218	Right-handed 310
Helix 13	AB4	A	262	278	Right-handed alpha
Helix 14	AB5	A	279	281	Right-handed 310
Helix 15	AB6	B	22	34	Right-handed alpha
Helix 16	AB7	B	61	63	Right-handed 310
Helix 17	AB8	B	64	78	Right-handed alpha
Helix 18	AB9	B	90	94	Right-handed 310
Helix 19	AC1	B	98	105	Right-handed alpha
Helix 20	AC2	B	112	122	Right-handed alpha
Helix 21	AC3	B	124	136	Right-handed alpha
Helix 22	AC4	B	137	148	Right-handed alpha
Helix 23	AC5	B	160	164	Right-handed 310
Helix 24	AC6	B	175	189	Right-handed alpha
Helix 25	AC7	B	193	206	Right-handed alpha
Helix 26	AC8	B	213	218	Right-handed 310
Helix 27	AC9	B	262	279	Right-handed alpha
Helix 28	AD1	C	22	34	Right-handed alpha
Helix 29	AD2	C	61	63	Right-handed 310
Helix 30	AD3	C	64	78	Right-handed alpha
Helix 31	AD4	C	90	94	Right-handed 310
Helix 32	AD5	C	98	105	Right-handed alpha
Helix 33	AD6	C	112	122	Right-handed alpha
Helix 34	AD7	C	124	136	Right-handed alpha
Helix 35	AD8	C	137	148	Right-handed alpha
Helix 36	AD9	C	160	164	Right-handed 310
Helix 37	AE1	C	175	189	Right-handed alpha
Helix 38	AE2	C	193	206	Right-handed alpha
Helix 39	AE3	C	213	218	Right-handed 310
Helix 40	AE4	C	262	279	Right-handed alpha
Helix 41	AE5	D	22	34	Right-handed alpha
Helix 42	AE6	D	64	78	Right-handed alpha
Helix 43	AE7	D	90	94	Right-handed 310
Helix 44	AE8	D	98	105	Right-handed alpha
Helix 45	AE9	D	112	122	Right-handed alpha
Helix 46	AF1	D	124	136	Right-handed alpha
Helix 47	AF2	D	137	148	Right-handed alpha
Helix 48	AF3	D	175	189	Right-handed alpha
Helix 49	AF4	D	193	206	Right-handed alpha
Helix 50	AF5	D	213	218	Right-handed 310
Helix 51	AF6	D	262	279	Right-handed alpha

There are 12 sheets in PDB entry 5EOO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	52	first strand
Strand 2	A	36	43	anti-parallel
Strand 3	A	249	257	anti-parallel
Strand 4	A	235	243	anti-parallel
Strand 5	A	223	231	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	58	59	first strand
Strand 2	A	173	174	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	88	first strand
Strand 2	A	109	111	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	52	first strand
Strand 2	B	36	43	anti-parallel
Strand 3	B	249	257	anti-parallel
Strand 4	B	235	243	anti-parallel
Strand 5	B	223	231	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	59	first strand
Strand 2	B	173	174	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	88	first strand
Strand 2	B	109	111	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	52	first strand
Strand 2	C	36	43	anti-parallel
Strand 3	C	249	257	anti-parallel
Strand 4	C	235	243	anti-parallel
Strand 5	C	223	231	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	58	59	first strand
Strand 2	C	173	174	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	88	first strand
Strand 2	C	109	111	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	52	first strand
Strand 2	D	36	43	anti-parallel
Strand 3	D	249	257	anti-parallel
Strand 4	D	235	243	anti-parallel
Strand 5	D	223	231	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	58	59	first strand
Strand 2	D	173	174	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	86	88	first strand
Strand 2	D	109	111	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EOO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EOO