Analysis of interatomic Contacts of Structural Units in PDB entry:
5EP0


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EP0 entry

There is 1 chain in PDB entry 5EP0 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 3LEU 388
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5EP0. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 23Right-handed alpha
Helix 2
AA2
A
24 27Right-handed 310
Helix 3
AA3
A
35 46Right-handed alpha
Helix 4
AA4
A
61 73Right-handed alpha
Helix 5
AA5
A
83 85Right-handed 310
Helix 6
AA6
A
86 97Right-handed alpha
Helix 7
AA7
A
107 123Right-handed alpha
Helix 8
AA8
A
132 141Right-handed 310
Helix 9
AA9
A
146 161Right-handed alpha
Helix 10
AB1
A
175 187Right-handed alpha
Helix 11
AB2
A
203 213Right-handed alpha
Helix 12
AB3
A
228 233Right-handed alpha
Helix 13
AB4
A
242 246Right-handed 310
Helix 14
AB5
A
247 261Right-handed alpha
Helix 15
AB6
A
285 292Right-handed alpha
Helix 16
AB7
A
296 304Right-handed alpha
Helix 17
AB8
A
312 317Right-handed 310
Helix 18
AB9
A
318 336Right-handed alpha
Helix 19
AC1
A
343 353Right-handed alpha
Helix 20
AC2
A
357 373Right-handed alpha
Helix 21
AC3
A
379 383Right-handed 310
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There are 4 sheets in PDB entry 5EP0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 33first strand
Strand 2
A
5 9parallel
Strand 3
A
50 54parallel
Strand 4
A
78 82parallel
Strand 5
A
100 103parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
194 198first strand
Strand 2
A
237 241parallel
Strand 3
A
277 282parallel
Strand 4
A
166 169parallel
Strand 5
A
306 309parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
272 273anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 342first strand
Strand 2
A
377 378parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il