Analysis of interatomic Contacts of Structural Units in PDB entry:
5EPD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EPD entry

There is 1 chain in PDB entry 5EPD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5ASN 365
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 5EPD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
33 35Right-handed 310
Helix 2
AA2
A
40 47Right-handed alpha
Helix 3
AA3
A
76 93Right-handed alpha
Helix 4
AA4
A
109 117Right-handed 310
Helix 5
AA5
A
147 149Right-handed 310
Helix 6
AA6
A
150 168Right-handed alpha
Helix 7
AA7
A
181 188Right-handed alpha
Helix 8
AA8
A
201 206Right-handed alpha
Helix 9
AA9
A
206 221Right-handed alpha
Helix 10
AB1
A
242 257Right-handed alpha
Helix 11
AB2
A
279 287Right-handed alpha
Helix 12
AB3
A
299 308Right-handed alpha
Helix 13
AB4
A
317 323Right-handed alpha
Helix 14
AB5
A
325 333Right-handed alpha
Helix 15
AB6
A
340 344Right-handed 310
Helix 16
AB7
A
357 361Right-handed 310
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There are 5 sheets in PDB entry 5EPD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 11first strand
Strand 2
A
16 17anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
97 102parallel
Strand 3
A
173 176parallel
Strand 4
A
225 229parallel
Strand 5
A
261 265parallel
Strand 6
A
290 294parallel
Strand 7
A
313 316parallel
Strand 8
A
21 23parallel
Strand 9
A
53 55parallel
Strand 10
A
97 102parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 32first strand
Strand 2
A
36 37anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
120 121first strand
Strand 2
A
144 145parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 133first strand
Strand 2
A
136 139anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il