Analysis of interatomic Contacts of Structural Units in PDB entry:
5EPE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EPE entry

There is 1 chain in PDB entry 5EPE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MSE 1ARG 248
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5EPE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 12Right-handed alpha
Helix 2
AA2
A
21 32Right-handed alpha
Helix 3
AA3
A
48 59Right-handed alpha
Helix 4
AA4
A
68 83Right-handed alpha
Helix 5
AA5
A
112 117Right-handed 310
Helix 6
AA6
A
118 128Right-handed alpha
Helix 7
AA7
A
149 156Right-handed alpha
Helix 8
AA8
A
160 164Right-handed 310
Helix 9
AA9
A
166 178Right-handed alpha
Helix 10
AB1
A
188 210Right-handed alpha
Helix 11
AB2
A
215 233Right-handed alpha
Helix 12
AB3
A
233 237Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5EPE.

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 92first strand
Strand 2
A
61 66parallel
Strand 3
A
39 43parallel
Strand 4
A
104 110parallel
Strand 5
A
130 143parallel
Strand 6
A
238 247anti-parallel
Strand 7
A
179 186anti-parallel
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