Analysis of interatomic Contacts of Structural Units in PDB entry:
5EPO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EPO entry

There are 4 chains in PDB entry 5EPO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2ARG 262
B
 LYS 2ARG 262
C
 LYS 2ARG 262
D
 MET 1PRO 261
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 5EPO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
67 82Right-handed alpha
Helix 4
AA4
A
106 135Right-handed alpha
Helix 5
AA5
A
145 149Right-handed 310
Helix 6
AA6
A
155 177Right-handed alpha
Helix 7
AA7
A
193 200Right-handed alpha
Helix 8
AA8
A
201 211Right-handed alpha
Helix 9
AA9
A
219 232Right-handed alpha
Helix 10
AB1
A
233 236Right-handed 310
Helix 11
AB2
A
255 260Right-handed alpha
Helix 12
AB3
B
16 29Right-handed alpha
Helix 13
AB4
B
39 53Right-handed alpha
Helix 14
AB5
B
68 82Right-handed alpha
Helix 15
AB6
B
106 136Right-handed alpha
Helix 16
AB7
B
145 149Right-handed 310
Helix 17
AB8
B
155 177Right-handed alpha
Helix 18
AB9
B
193 200Right-handed alpha
Helix 19
AC1
B
201 211Right-handed alpha
Helix 20
AC2
B
219 232Right-handed alpha
Helix 21
AC3
B
233 236Right-handed 310
Helix 22
AC4
B
255 260Right-handed alpha
Helix 23
AC5
C
16 29Right-handed alpha
Helix 24
AC6
C
39 53Right-handed alpha
Helix 25
AC7
C
67 82Right-handed alpha
Helix 26
AC8
C
106 135Right-handed alpha
Helix 27
AC9
C
145 149Right-handed 310
Helix 28
AD1
C
155 177Right-handed alpha
Helix 29
AD2
C
193 200Right-handed alpha
Helix 30
AD3
C
201 211Right-handed alpha
Helix 31
AD4
C
219 232Right-handed alpha
Helix 32
AD5
C
233 236Right-handed 310
Helix 33
AD6
C
255 260Right-handed alpha
Helix 34
AD7
D
16 29Right-handed alpha
Helix 35
AD8
D
39 53Right-handed alpha
Helix 36
AD9
D
68 82Right-handed alpha
Helix 37
AE1
D
106 135Right-handed alpha
Helix 38
AE2
D
145 149Right-handed 310
Helix 39
AE3
D
155 177Right-handed alpha
Helix 40
AE4
D
193 200Right-handed alpha
Helix 41
AE5
D
201 211Right-handed alpha
Helix 42
AE6
D
219 232Right-handed alpha
Helix 43
AE7
D
233 236Right-handed 310
Helix 44
AE8
D
255 260Right-handed alpha
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There are 4 sheets in PDB entry 5EPO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
56 61first strand
Strand 2
A
32 37parallel
Strand 3
A
8 12parallel
Strand 4
A
86 89parallel
Strand 5
A
138 143parallel
Strand 6
A
181 188parallel
Strand 7
A
242 245parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
8 12parallel
Strand 4
B
86 89parallel
Strand 5
B
138 143parallel
Strand 6
B
181 188parallel
Strand 7
B
242 245parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
56 61first strand
Strand 2
C
32 37parallel
Strand 3
C
8 12parallel
Strand 4
C
86 89parallel
Strand 5
C
138 143parallel
Strand 6
C
181 188parallel
Strand 7
C
242 245parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
56 61first strand
Strand 2
D
32 37parallel
Strand 3
D
8 12parallel
Strand 4
D
86 89parallel
Strand 5
D
138 143parallel
Strand 6
D
181 188parallel
Strand 7
D
242 245parallel
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