Analysis of interatomic Contacts of Structural Units in PDB entry:
5EPP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EPP entry

There are 2 chains in PDB entry 5EPP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 21LYS 190
B
 SER 300SER 314
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 6 helices in PDB entry 5EPP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 49Right-handed alpha
Helix 2
AA2
A
85 93Right-handed alpha
Helix 3
AA3
A
120 123Right-handed 310
Helix 4
AA4
A
129 134Right-handed alpha
Helix 5
AA5
A
134 140Right-handed alpha
Helix 6
AA6
B
301 314Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5EPP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 30first strand
Strand 2
A
81 84parallel
Strand 3
A
38 41anti-parallel
Strand 4
A
66 73parallel
Strand 5
A
56 60anti-parallel
Strand 6
A
99 104anti-parallel
Strand 7
A
24 30anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 156first strand
Strand 2
A
159 169anti-parallel
Strand 3
A
113 118anti-parallel
Strand 4
A
181 183parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
144 147first strand
Strand 2
A
173 176anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il