Analysis of interatomic Contacts of Structural Units in PDB entry:
5EPW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EPW entry

There are 2 chains in PDB entry 5EPW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 228LYS 331
B
 PRO 228GLU 337
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5EPW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
229 233Right-handed 310
Helix 2
AA2
A
234 238Right-handed 310
Helix 3
AA3
A
245 250Right-handed alpha
Helix 4
AA4
A
261 268Right-handed alpha
Helix 5
AA5
A
269 271Right-handed 310
Helix 6
AA6
A
273 279Right-handed alpha
Helix 7
AA7
A
283 290Right-handed alpha
Helix 8
AA8
A
318 326Right-handed alpha
Helix 9
AA9
A
327 331Right-handed 310
Helix 10
AB1
B
229 233Right-handed 310
Helix 11
AB2
B
234 238Right-handed 310
Helix 12
AB3
B
245 250Right-handed alpha
Helix 13
AB4
B
261 268Right-handed alpha
Helix 14
AB5
B
269 271Right-handed 310
Helix 15
AB6
B
273 279Right-handed alpha
Helix 16
AB7
B
283 290Right-handed alpha
Helix 17
AB8
B
318 326Right-handed alpha
Helix 18
AB9
B
327 331Right-handed 310
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There is 1 sheet (AA1) in PDB entry 5EPW.

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 298first strand
Strand 2
A
301 313anti-parallel
Strand 3
B
301 313anti-parallel
Strand 4
B
292 298anti-parallel
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