Analysis of interatomic Contacts of Structural Units in PDB entry:
5EQ6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EQ6 entry

There are 2 chains in PDB entry 5EQ6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY -2ASP 354
B
 SER -1ASP 354
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5EQ6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
56 72Right-handed alpha
Helix 2
AA2
A
83 87Right-handed 310
Helix 3
AA3
A
99 115Right-handed alpha
Helix 4
AA4
A
148 160Right-handed alpha
Helix 5
AA5
A
171 180Right-handed alpha
Helix 6
AA6
A
181 184Right-handed 310
Helix 7
AA7
A
225 237Right-handed alpha
Helix 8
AA8
A
239 249Right-handed alpha
Helix 9
AA9
A
255 260Right-handed alpha
Helix 10
AB1
A
260 279Right-handed alpha
Helix 11
AB2
A
295 300Right-handed 310
Helix 12
AB3
A
302 312Right-handed alpha
Helix 13
AB4
A
331 339Right-handed alpha
Helix 14
AB5
A
342 350Right-handed alpha
Helix 15
AB6
A
351 354Right-handed 310
Helix 16
AB7
B
56 72Right-handed alpha
Helix 17
AB8
B
83 87Right-handed 310
Helix 18
AB9
B
99 115Right-handed alpha
Helix 19
AC1
B
118 120Right-handed 310
Helix 20
AC2
B
148 160Right-handed alpha
Helix 21
AC3
B
171 180Right-handed alpha
Helix 22
AC4
B
182 187Right-handed alpha
Helix 23
AC5
B
225 237Right-handed alpha
Helix 24
AC6
B
239 250Right-handed alpha
Helix 25
AC7
B
255 260Right-handed alpha
Helix 26
AC8
B
260 281Right-handed alpha
Helix 27
AC9
B
295 300Right-handed 310
Helix 28
AD1
B
302 312Right-handed alpha
Helix 29
AD2
B
331 338Right-handed alpha
Helix 30
AD3
B
339 341Right-handed 310
Helix 31
AD4
B
342 350Right-handed alpha
Helix 32
AD5
B
351 354Right-handed 310
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There are 8 sheets in PDB entry 5EQ6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
164 170first strand
Strand 2
A
77 82parallel
Strand 3
A
13 17parallel
Strand 4
A
21 29anti-parallel
Strand 5
A
34 43anti-parallel
Strand 6
A
325 326parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
49 50first strand
Strand 2
A
53 54anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
138 147anti-parallel
Strand 3
A
122 131anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 221first strand
Strand 2
A
205 211anti-parallel
Strand 3
A
194 200anti-parallel
Strand 4
A
290 294parallel
Strand 5
A
315 317parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 170first strand
Strand 2
B
77 82parallel
Strand 3
B
13 17parallel
Strand 4
B
21 28anti-parallel
Strand 5
B
35 43anti-parallel
Strand 6
B
325 326parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
49 50first strand
Strand 2
B
53 54anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 95first strand
Strand 2
B
138 147anti-parallel
Strand 3
B
122 131anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
214 221first strand
Strand 2
B
205 211anti-parallel
Strand 3
B
194 200anti-parallel
Strand 4
B
290 294parallel
Strand 5
B
315 317parallel
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