Analysis of interatomic Contacts of Structural Units in PDB entry:
5EQD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EQD entry

There are 2 chains in PDB entry 5EQD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 14THR 405
B
 GLY 15THR 405
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 38 helices in PDB entry 5EQD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 40Right-handed alpha
Helix 2
AA2
A
53 57Right-handed 310
Helix 3
AA3
A
80 88Right-handed alpha
Helix 4
AA4
A
114 123Right-handed alpha
Helix 5
AA5
A
127 140Right-handed alpha
Helix 6
AA6
A
141 142Right-handed 310
Helix 7
AA7
A
143 147Right-handed 310
Helix 8
AA8
A
149 159Right-handed alpha
Helix 9
AA9
A
159 167Right-handed alpha
Helix 10
AB1
A
167 176Right-handed alpha
Helix 11
AB2
A
178 182Right-handed 310
Helix 12
AB3
A
183 187Right-handed 310
Helix 13
AB4
A
212 221Right-handed alpha
Helix 14
AB5
A
233 245Right-handed alpha
Helix 15
AB6
A
255 260Right-handed alpha
Helix 16
AB7
A
306 309Right-handed 310
Helix 17
AB8
A
341 363Right-handed alpha
Helix 18
AB9
A
367 373Right-handed alpha
Helix 19
AC1
A
377 392Right-handed alpha
Helix 20
AC2
A
392 400Right-handed alpha
Helix 21
AC3
B
25 40Right-handed alpha
Helix 22
AC4
B
53 56Right-handed 310
Helix 23
AC5
B
80 88Right-handed alpha
Helix 24
AC6
B
114 123Right-handed alpha
Helix 25
AC7
B
127 139Right-handed alpha
Helix 26
AC8
B
149 159Right-handed alpha
Helix 27
AC9
B
159 167Right-handed alpha
Helix 28
AD1
B
167 176Right-handed alpha
Helix 29
AD2
B
178 182Right-handed 310
Helix 30
AD3
B
183 190Right-handed 310
Helix 31
AD4
B
212 221Right-handed alpha
Helix 32
AD5
B
233 245Right-handed alpha
Helix 33
AD6
B
255 260Right-handed alpha
Helix 34
AD7
B
306 309Right-handed 310
Helix 35
AD8
B
341 363Right-handed alpha
Helix 36
AD9
B
367 373Right-handed alpha
Helix 37
AE1
B
377 392Right-handed alpha
Helix 38
AE2
B
392 400Right-handed alpha
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There are 8 sheets in PDB entry 5EQD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
226 229first strand
Strand 2
A
43 46parallel
Strand 3
A
19 22parallel
Strand 4
A
250 252parallel
Strand 5
A
364 366parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
67 68anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 78first strand
Strand 2
A
205 207anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 111first strand
Strand 2
A
100 104anti-parallel
Strand 3
A
289 292parallel
Strand 4
A
301 304anti-parallel
Strand 5
A
319 328anti-parallel
Strand 6
A
269 279anti-parallel
Strand 7
A
337 338anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
226 229first strand
Strand 2
B
43 46parallel
Strand 3
B
19 22parallel
Strand 4
B
250 252parallel
Strand 5
B
364 366parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
58 60first strand
Strand 2
B
67 69anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 78first strand
Strand 2
B
205 207anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 111first strand
Strand 2
B
100 104anti-parallel
Strand 3
B
289 292parallel
Strand 4
B
301 304anti-parallel
Strand 5
B
319 328anti-parallel
Strand 6
B
269 279anti-parallel
Strand 7
B
337 338anti-parallel
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