Analysis of interatomic Contacts of Structural Units in PDB entry:
5EQF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EQF entry

There are 2 chains in PDB entry 5EQF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2LYS 387
B
 SER 2LEU 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 35 helices in PDB entry 5EQF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 26Right-handed alpha
Helix 2
AA2
A
40 43Right-handed 310
Helix 3
AA3
A
67 75Right-handed alpha
Helix 4
AA4
A
101 110Right-handed alpha
Helix 5
AA5
A
114 126Right-handed alpha
Helix 6
AA6
A
130 134Right-handed 310
Helix 7
AA7
A
136 146Right-handed alpha
Helix 8
AA8
A
146 154Right-handed alpha
Helix 9
AA9
A
154 163Right-handed alpha
Helix 10
AB1
A
171 176Right-handed alpha
Helix 11
AB2
A
198 209Right-handed alpha
Helix 12
AB3
A
220 232Right-handed alpha
Helix 13
AB4
A
242 247Right-handed alpha
Helix 14
AB5
A
293 303Right-handed 310
Helix 15
AB6
A
330 352Right-handed alpha
Helix 16
AB7
A
356 361Right-handed alpha
Helix 17
AB8
A
366 381Right-handed alpha
Helix 18
AB9
A
381 386Right-handed alpha
Helix 19
AC1
B
12 26Right-handed alpha
Helix 20
AC2
B
40 44Right-handed 310
Helix 21
AC3
B
67 75Right-handed alpha
Helix 22
AC4
B
101 110Right-handed alpha
Helix 23
AC5
B
114 126Right-handed alpha
Helix 24
AC6
B
130 134Right-handed 310
Helix 25
AC7
B
136 146Right-handed alpha
Helix 26
AC8
B
146 154Right-handed alpha
Helix 27
AC9
B
154 163Right-handed alpha
Helix 28
AD1
B
170 174Right-handed 310
Helix 29
AD2
B
198 209Right-handed alpha
Helix 30
AD3
B
220 229Right-handed alpha
Helix 31
AD4
B
242 247Right-handed alpha
Helix 32
AD5
B
293 303Right-handed 310
Helix 33
AD6
B
330 352Right-handed alpha
Helix 34
AD7
B
356 362Right-handed alpha
Helix 35
AD8
B
366 381Right-handed alpha
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There are 8 sheets in PDB entry 5EQF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
213 216first strand
Strand 2
A
30 33parallel
Strand 3
A
6 9parallel
Strand 4
A
237 239parallel
Strand 5
A
353 355parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 47first strand
Strand 2
A
54 56anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
63 65first strand
Strand 2
A
192 194anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 97first strand
Strand 2
A
87 91anti-parallel
Strand 3
A
276 279parallel
Strand 4
A
288 291anti-parallel
Strand 5
A
308 317anti-parallel
Strand 6
A
256 266anti-parallel
Strand 7
A
326 327anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
213 216first strand
Strand 2
B
30 33parallel
Strand 3
B
6 9parallel
Strand 4
B
237 239parallel
Strand 5
B
353 355parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
46 47first strand
Strand 2
B
54 55anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
63 65first strand
Strand 2
B
192 194anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
94 98first strand
Strand 2
B
87 91anti-parallel
Strand 3
B
276 279parallel
Strand 4
B
288 291anti-parallel
Strand 5
B
308 317anti-parallel
Strand 6
B
256 266anti-parallel
Strand 7
B
326 327anti-parallel
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