Analysis of interatomic Contacts of Structural Units in PDB entry:
5EQP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EQP entry

There are 2 chains in PDB entry 5EQP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 82VAL 457
B
 GLN 82VAL 457
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5EQP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
85 99Right-handed alpha
Helix 2
AA2
A
100 106Right-handed 310
Helix 3
AA3
A
176 190Right-handed alpha
Helix 4
AA4
A
215 219Right-handed 310
Helix 5
AA5
A
221 237Right-handed alpha
Helix 6
AA6
A
247 262Right-handed alpha
Helix 7
AA7
A
267 279Right-handed alpha
Helix 8
AA8
A
281 294Right-handed alpha
Helix 9
AA9
A
308 310Right-handed 310
Helix 10
AB1
A
339 350Right-handed alpha
Helix 11
AB2
A
366 369Right-handed 310
Helix 12
AB3
A
371 387Right-handed alpha
Helix 13
AB4
A
388 393Right-handed 310
Helix 14
AB5
A
394 431Right-handed alpha
Helix 15
AB6
A
436 456Right-handed alpha
Helix 16
AB7
B
88 99Right-handed alpha
Helix 17
AB8
B
100 105Right-handed 310
Helix 18
AB9
B
178 190Right-handed alpha
Helix 19
AC1
B
215 220Right-handed 310
Helix 20
AC2
B
221 237Right-handed alpha
Helix 21
AC3
B
247 261Right-handed alpha
Helix 22
AC4
B
267 279Right-handed alpha
Helix 23
AC5
B
281 295Right-handed alpha
Helix 24
AC6
B
308 310Right-handed 310
Helix 25
AC7
B
339 349Right-handed alpha
Helix 26
AC8
B
366 369Right-handed 310
Helix 27
AC9
B
371 387Right-handed alpha
Helix 28
AD1
B
389 393Right-handed 310
Helix 29
AD2
B
394 431Right-handed alpha
Helix 30
AD3
B
436 456Right-handed alpha
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There are 8 sheets in PDB entry 5EQP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 117first strand
Strand 2
A
123 128anti-parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
203 207anti-parallel
Strand 5
A
196 200anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
211 213first strand
Strand 2
A
312 315anti-parallel
Strand 3
A
326 328anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
300 303first strand
Strand 2
A
335 338anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
363 364anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
112 117first strand
Strand 2
B
123 128anti-parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
203 207anti-parallel
Strand 5
B
196 200anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
211 213first strand
Strand 2
B
312 315anti-parallel
Strand 3
B
326 328anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
300 303first strand
Strand 2
B
335 338anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
363 364anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il