Analysis of interatomic Contacts of Structural Units in PDB entry:
5EQV


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EQV entry

There is 1 chain in PDB entry 5EQV (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 27GLN 362
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5EQV. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
59 74Right-handed alpha
Helix 2
AA2
A
89 99Right-handed alpha
Helix 3
AA3
A
106 113Right-handed alpha
Helix 4
AA4
A
123 128Right-handed 310
Helix 5
AA5
A
130 140Right-handed alpha
Helix 6
AA6
A
191 196Right-handed alpha
Helix 7
AA7
A
196 201Right-handed alpha
Helix 8
AA8
A
208 223Right-handed alpha
Helix 9
AA9
A
248 253Right-handed alpha
Helix 10
AB1
A
272 276Right-handed 310
Helix 11
AB2
A
342 362Right-handed alpha
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There are 6 sheets in PDB entry 5EQV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
145 146first strand
Strand 2
A
119 121parallel
Strand 3
A
77 81parallel
Strand 4
A
29 37parallel
Strand 5
A
302 311anti-parallel
Strand 6
A
318 328anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
A
53 54anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
204 206anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 171first strand
Strand 2
A
177 187anti-parallel
Strand 3
A
227 232parallel
Strand 4
A
260 262parallel
Strand 5
A
291 296parallel
Strand 6
A
269 270anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 171first strand
Strand 2
A
177 187anti-parallel
Strand 3
A
227 232parallel
Strand 4
A
260 262parallel
Strand 5
A
291 296parallel
Strand 6
A
287 288anti-parallel
Strand 7
A
281 282anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
330 331first strand
Strand 2
A
336 337anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il