Analysis of interatomic Contacts of Structural Units in PDB entry:
5ER0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ER0 entry

There are 4 chains in PDB entry 5ER0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ASN 449
B	SER 0	ASN 449
C	SER 0	ASN 449
D	SER 0	ASN 449

There are 58 helices in PDB entry 5ER0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	10	23	Right-handed alpha
Helix 2	AA2	A	40	42	Right-handed 310
Helix 3	AA3	A	43	49	Right-handed alpha
Helix 4	AA4	A	54	59	Right-handed 310
Helix 5	AA5	A	62	69	Right-handed alpha
Helix 6	AA6	A	133	144	Right-handed alpha
Helix 7	AA7	A	156	168	Right-handed alpha
Helix 8	AA8	A	188	202	Right-handed alpha
Helix 9	AA9	A	246	250	Right-handed 310
Helix 10	AB1	A	278	281	Right-handed 310
Helix 11	AB2	A	296	310	Right-handed alpha
Helix 12	AB3	A	340	347	Right-handed alpha
Helix 13	AB4	A	395	408	Right-handed alpha
Helix 14	AB5	A	411	418	Right-handed alpha
Helix 15	AB6	A	431	449	Right-handed alpha
Helix 16	AB7	B	10	23	Right-handed alpha
Helix 17	AB8	B	42	49	Right-handed alpha
Helix 18	AB9	B	54	59	Right-handed 310
Helix 19	AC1	B	62	70	Right-handed alpha
Helix 20	AC2	B	133	144	Right-handed alpha
Helix 21	AC3	B	145	147	Right-handed 310
Helix 22	AC4	B	156	168	Right-handed alpha
Helix 23	AC5	B	188	202	Right-handed alpha
Helix 24	AC6	B	246	250	Right-handed 310
Helix 25	AC7	B	278	281	Right-handed 310
Helix 26	AC8	B	296	310	Right-handed alpha
Helix 27	AC9	B	340	347	Right-handed alpha
Helix 28	AD1	B	395	408	Right-handed alpha
Helix 29	AD2	B	411	418	Right-handed alpha
Helix 30	AD3	B	431	449	Right-handed alpha
Helix 31	AD4	C	10	23	Right-handed alpha
Helix 32	AD5	C	42	49	Right-handed alpha
Helix 33	AD6	C	54	59	Right-handed 310
Helix 34	AD7	C	62	69	Right-handed alpha
Helix 35	AD8	C	133	144	Right-handed alpha
Helix 36	AD9	C	156	168	Right-handed alpha
Helix 37	AE1	C	188	202	Right-handed alpha
Helix 38	AE2	C	246	250	Right-handed 310
Helix 39	AE3	C	278	281	Right-handed 310
Helix 40	AE4	C	296	310	Right-handed alpha
Helix 41	AE5	C	340	347	Right-handed alpha
Helix 42	AE6	C	395	408	Right-handed alpha
Helix 43	AE7	C	411	418	Right-handed alpha
Helix 44	AE8	C	431	449	Right-handed alpha
Helix 45	AE9	D	10	23	Right-handed alpha
Helix 46	AF1	D	42	49	Right-handed alpha
Helix 47	AF2	D	54	59	Right-handed 310
Helix 48	AF3	D	62	69	Right-handed alpha
Helix 49	AF4	D	133	145	Right-handed alpha
Helix 50	AF5	D	156	169	Right-handed alpha
Helix 51	AF6	D	188	202	Right-handed alpha
Helix 52	AF7	D	246	250	Right-handed 310
Helix 53	AF8	D	278	281	Right-handed 310
Helix 54	AF9	D	296	310	Right-handed alpha
Helix 55	AG1	D	340	347	Right-handed alpha
Helix 56	AG2	D	395	408	Right-handed alpha
Helix 57	AG3	D	411	418	Right-handed alpha
Helix 58	AG4	D	431	449	Right-handed alpha

There are 28 sheets in PDB entry 5ER0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	72	75	first strand
Strand 2	A	27	32	parallel
Strand 3	A	2	6	parallel
Strand 4	A	106	109	parallel
Strand 5	A	274	276	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	83	first strand
Strand 2	A	88	93	anti-parallel
Strand 3	A	99	103	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	113	115	first strand
Strand 2	A	242	244	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	128	129	first strand
Strand 2	A	235	238	parallel
Strand 3	A	149	153	parallel
Strand 4	A	172	177	parallel
Strand 5	A	205	208	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	212	218	first strand
Strand 2	A	221	226	anti-parallel
Strand 3	A	230	233	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	283	285	first strand
Strand 2	A	290	292	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	325	329	first strand
Strand 2	A	332	338	anti-parallel
Strand 3	A	384	391	anti-parallel
Strand 4	A	370	377	anti-parallel
Strand 5	A	352	359	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	72	75	first strand
Strand 2	B	27	32	parallel
Strand 3	B	2	6	parallel
Strand 4	B	106	109	parallel
Strand 5	B	274	276	parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	77	83	first strand
Strand 2	B	88	93	anti-parallel
Strand 3	B	99	103	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	113	115	first strand
Strand 2	B	242	244	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	128	129	first strand
Strand 2	B	235	238	parallel
Strand 3	B	149	153	parallel
Strand 4	B	172	177	parallel
Strand 5	B	205	208	parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	212	218	first strand
Strand 2	B	221	226	anti-parallel
Strand 3	B	230	233	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	283	285	first strand
Strand 2	B	290	292	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	325	329	first strand
Strand 2	B	332	338	anti-parallel
Strand 3	B	384	391	anti-parallel
Strand 4	B	370	377	anti-parallel
Strand 5	B	352	359	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	72	75	first strand
Strand 2	C	27	32	parallel
Strand 3	C	2	6	parallel
Strand 4	C	106	109	parallel
Strand 5	C	274	276	parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	83	first strand
Strand 2	C	88	93	anti-parallel
Strand 3	C	99	103	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	113	115	first strand
Strand 2	C	242	244	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	128	129	first strand
Strand 2	C	235	238	parallel
Strand 3	C	149	153	parallel
Strand 4	C	172	177	parallel
Strand 5	C	205	208	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	212	218	first strand
Strand 2	C	221	226	anti-parallel
Strand 3	C	230	233	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	283	285	first strand
Strand 2	C	290	292	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	329	first strand
Strand 2	C	332	338	anti-parallel
Strand 3	C	384	391	anti-parallel
Strand 4	C	370	377	anti-parallel
Strand 5	C	352	359	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	72	75	first strand
Strand 2	D	27	32	parallel
Strand 3	D	2	6	parallel
Strand 4	D	106	109	parallel
Strand 5	D	274	276	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	77	83	first strand
Strand 2	D	88	93	anti-parallel
Strand 3	D	99	103	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	113	115	first strand
Strand 2	D	242	244	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	128	129	first strand
Strand 2	D	235	238	parallel
Strand 3	D	149	153	parallel
Strand 4	D	172	177	parallel
Strand 5	D	205	208	parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	212	218	first strand
Strand 2	D	221	226	anti-parallel
Strand 3	D	230	233	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	283	285	first strand
Strand 2	D	290	292	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	325	329	first strand
Strand 2	D	332	338	anti-parallel
Strand 3	D	384	391	anti-parallel
Strand 4	D	370	377	anti-parallel
Strand 5	D	352	359	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ER0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ER0