Analysis of interatomic Contacts of Structural Units in PDB entry:
5ER6


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ER6 entry

There are 4 chains in PDB entry 5ER6 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0ALA 250
B
 HIS 0ALA 250
C
 HIS 0ALA 250
D
 MET 1ALA 250
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 5ER6. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
39 54Right-handed alpha
Helix 3
AA3
A
66 82Right-handed alpha
Helix 4
AA4
A
103 116Right-handed alpha
Helix 5
AA5
A
116 126Right-handed alpha
Helix 6
AA6
A
126 134Right-handed alpha
Helix 7
AA7
A
142 146Right-handed 310
Helix 8
AA8
A
152 174Right-handed alpha
Helix 9
AA9
A
175 177Right-handed 310
Helix 10
AB1
A
188 193Right-handed 310
Helix 11
AB2
A
194 198Right-handed 310
Helix 12
AB3
A
203 208Right-handed alpha
Helix 13
AB4
A
218 230Right-handed alpha
Helix 14
AB5
A
231 234Right-handed 310
Helix 15
AB6
A
246 250Right-handed 310
Helix 16
AB7
B
16 29Right-handed alpha
Helix 17
AB8
B
39 53Right-handed alpha
Helix 18
AB9
B
66 82Right-handed alpha
Helix 19
AC1
B
103 116Right-handed alpha
Helix 20
AC2
B
116 126Right-handed alpha
Helix 21
AC3
B
126 134Right-handed alpha
Helix 22
AC4
B
142 146Right-handed 310
Helix 23
AC5
B
152 174Right-handed alpha
Helix 24
AC6
B
175 177Right-handed 310
Helix 25
AC7
B
203 208Right-handed alpha
Helix 26
AC8
B
218 230Right-handed alpha
Helix 27
AC9
B
231 234Right-handed 310
Helix 28
AD1
B
246 250Right-handed 310
Helix 29
AD2
C
16 29Right-handed alpha
Helix 30
AD3
C
39 53Right-handed alpha
Helix 31
AD4
C
66 82Right-handed alpha
Helix 32
AD5
C
102 116Right-handed alpha
Helix 33
AD6
C
116 126Right-handed alpha
Helix 34
AD7
C
126 134Right-handed alpha
Helix 35
AD8
C
142 146Right-handed 310
Helix 36
AD9
C
152 174Right-handed alpha
Helix 37
AE1
C
175 177Right-handed 310
Helix 38
AE2
C
204 208Right-handed alpha
Helix 39
AE3
C
218 230Right-handed alpha
Helix 40
AE4
C
231 234Right-handed 310
Helix 41
AE5
C
246 250Right-handed 310
Helix 42
AE6
D
16 29Right-handed alpha
Helix 43
AE7
D
39 53Right-handed alpha
Helix 44
AE8
D
66 82Right-handed alpha
Helix 45
AE9
D
103 116Right-handed alpha
Helix 46
AF1
D
116 126Right-handed alpha
Helix 47
AF2
D
126 134Right-handed alpha
Helix 48
AF3
D
142 146Right-handed 310
Helix 49
AF4
D
152 174Right-handed alpha
Helix 50
AF5
D
175 177Right-handed 310
Helix 51
AF6
D
203 208Right-handed alpha
Helix 52
AF7
D
218 230Right-handed alpha
Helix 53
AF8
D
231 234Right-handed 310
Helix 54
AF9
D
246 250Right-handed 310
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There are 4 sheets in PDB entry 5ER6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 61first strand
Strand 2
A
32 37parallel
Strand 3
A
8 11parallel
Strand 4
A
86 89parallel
Strand 5
A
136 140parallel
Strand 6
A
179 185parallel
Strand 7
A
240 243parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
56 61first strand
Strand 2
B
32 37parallel
Strand 3
B
8 11parallel
Strand 4
B
86 89parallel
Strand 5
B
136 140parallel
Strand 6
B
179 185parallel
Strand 7
B
240 243parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
57 61first strand
Strand 2
C
32 37parallel
Strand 3
C
8 11parallel
Strand 4
C
86 89parallel
Strand 5
C
136 140parallel
Strand 6
C
179 185parallel
Strand 7
C
240 243parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
57 61first strand
Strand 2
D
32 37parallel
Strand 3
D
8 11parallel
Strand 4
D
86 89parallel
Strand 5
D
136 140parallel
Strand 6
D
179 185parallel
Strand 7
D
240 243parallel
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