Analysis of interatomic Contacts of Structural Units in PDB entry:
5ER8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ER8 entry

There are 2 chains in PDB entry 5ER8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 344
B
 GLU 2LEU 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5ER8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
30 49Right-handed alpha
Helix 3
AA3
A
64 70Right-handed alpha
Helix 4
AA4
A
74 94Right-handed alpha
Helix 5
AA5
A
140 149Right-handed alpha
Helix 6
AA6
A
151 161Right-handed alpha
Helix 7
AA7
A
180 192Right-handed alpha
Helix 8
AA8
A
193 205Right-handed alpha
Helix 9
AA9
A
212 221Right-handed alpha
Helix 10
AB1
A
221 236Right-handed alpha
Helix 11
AB2
A
236 248Right-handed alpha
Helix 12
AB3
A
254 263Right-handed alpha
Helix 13
AB4
A
266 293Right-handed alpha
Helix 14
AB5
A
299 321Right-handed alpha
Helix 15
AB6
A
333 342Right-handed alpha
Helix 16
AB7
B
10 14Right-handed 310
Helix 17
AB8
B
30 49Right-handed alpha
Helix 18
AB9
B
64 70Right-handed alpha
Helix 19
AC1
B
74 94Right-handed alpha
Helix 20
AC2
B
141 151Right-handed alpha
Helix 21
AC3
B
151 168Right-handed alpha
Helix 22
AC4
B
180 192Right-handed alpha
Helix 23
AC5
B
193 205Right-handed alpha
Helix 24
AC6
B
212 236Right-handed alpha
Helix 25
AC7
B
236 247Right-handed alpha
Helix 26
AC8
B
254 264Right-handed alpha
Helix 27
AC9
B
266 294Right-handed alpha
Helix 28
AD1
B
299 323Right-handed alpha
Helix 29
AD2
B
333 342Right-handed alpha
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There are 2 sheets in PDB entry 5ER8. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
7 9first strand
Strand 2
A
25 27anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
26 28anti-parallel
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