Analysis of interatomic Contacts of Structural Units in PDB entry:
5ERE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ERE entry

There is 1 chain in PDB entry 5ERE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 32GLY 593
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5ERE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
45 64Right-handed alpha
Helix 2
AA2
A
77 92Right-handed alpha
Helix 3
AA3
A
102 116Right-handed alpha
Helix 4
AA4
A
142 155Right-handed alpha
Helix 5
AA5
A
167 181Right-handed alpha
Helix 6
AA6
A
198 207Right-handed alpha
Helix 7
AA7
A
220 231Right-handed alpha
Helix 8
AA8
A
240 244Right-handed 310
Helix 9
AA9
A
245 251Right-handed alpha
Helix 10
AB1
A
251 256Right-handed alpha
Helix 11
AB2
A
269 280Right-handed alpha
Helix 12
AB3
A
284 303Right-handed alpha
Helix 13
AB4
A
307 316Right-handed alpha
Helix 14
AB5
A
354 389Right-handed alpha
Helix 15
AB6
A
392 406Right-handed alpha
Helix 16
AB7
A
426 433Right-handed 310
Helix 17
AB8
A
440 450Right-handed alpha
Helix 18
AB9
A
491 502Right-handed alpha
Helix 19
AC1
A
522 526Right-handed 310
Helix 20
AC2
A
546 552Right-handed alpha
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There are 6 sheets in PDB entry 5ERE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 73first strand
Strand 2
A
34 39parallel
Strand 3
A
95 101parallel
Strand 4
A
119 123parallel
Strand 5
A
137 138parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 191first strand
Strand 2
A
160 165parallel
Strand 3
A
212 216parallel
Strand 4
A
236 239parallel
Strand 5
A
259 263parallel
Strand 6
A
339 345anti-parallel
Strand 7
A
348 351anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
325 329anti-parallel
Strand 3
A
335 336anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
421 425first strand
Strand 2
A
409 416anti-parallel
Strand 3
A
480 488anti-parallel
Strand 4
A
468 474anti-parallel
Strand 5
A
453 454anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
458 459first strand
Strand 2
A
465 466anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
517 519first strand
Strand 2
A
507 511anti-parallel
Strand 3
A
584 592anti-parallel
Strand 4
A
572 581anti-parallel
Strand 5
A
555 559anti-parallel
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