Analysis of interatomic Contacts of Structural Units in PDB entry:
5ERM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ERM entry

There are 2 chains in PDB entry 5ERM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 2LEU 344
B
 GLU 2LEU 344
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 5ERM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
30 49Right-handed alpha
Helix 2
AA2
A
64 70Right-handed alpha
Helix 3
AA3
A
74 76Right-handed 310
Helix 4
AA4
A
77 96Right-handed alpha
Helix 5
AA5
A
140 149Right-handed alpha
Helix 6
AA6
A
151 162Right-handed alpha
Helix 7
AA7
A
162 168Right-handed alpha
Helix 8
AA8
A
180 192Right-handed alpha
Helix 9
AA9
A
193 206Right-handed alpha
Helix 10
AB1
A
213 218Right-handed alpha
Helix 11
AB2
A
221 236Right-handed alpha
Helix 12
AB3
A
236 248Right-handed alpha
Helix 13
AB4
A
254 263Right-handed alpha
Helix 14
AB5
A
266 292Right-handed alpha
Helix 15
AB6
A
299 309Right-handed alpha
Helix 16
AB7
A
309 321Right-handed alpha
Helix 17
AB8
A
333 342Right-handed alpha
Helix 18
AB9
B
10 14Right-handed 310
Helix 19
AC1
B
31 49Right-handed alpha
Helix 20
AC2
B
64 70Right-handed alpha
Helix 21
AC3
B
74 76Right-handed 310
Helix 22
AC4
B
77 97Right-handed alpha
Helix 23
AC5
B
136 140Right-handed 310
Helix 24
AC6
B
141 151Right-handed alpha
Helix 25
AC7
B
151 167Right-handed alpha
Helix 26
AC8
B
180 192Right-handed alpha
Helix 27
AC9
B
193 206Right-handed alpha
Helix 28
AD1
B
213 236Right-handed alpha
Helix 29
AD2
B
236 247Right-handed alpha
Helix 30
AD3
B
254 263Right-handed alpha
Helix 31
AD4
B
266 294Right-handed alpha
Helix 32
AD5
B
299 321Right-handed alpha
Helix 33
AD6
B
333 342Right-handed alpha
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There are 2 sheets in PDB entry 5ERM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
26 28anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
6 8first strand
Strand 2
B
26 28anti-parallel
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