Analysis of interatomic Contacts of Structural Units in PDB entry:
5ERN


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5ERN entry

There are 2 chains in PDB entry 5ERN (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 27VAL 333
B
 ASP 27VAL 333
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 27 helices in PDB entry 5ERN. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 37Right-handed alpha
Helix 2
AA2
A
37 44Right-handed alpha
Helix 3
AA3
A
50 64Right-handed alpha
Helix 4
AA4
A
66 89Right-handed alpha
Helix 5
AA5
A
103 128Right-handed alpha
Helix 6
AA6
A
136 159Right-handed alpha
Helix 7
AA7
A
164 174Right-handed alpha
Helix 8
AA8
A
175 190Right-handed alpha
Helix 9
AA9
A
196 222Right-handed alpha
Helix 10
AB1
A
245 255Right-handed alpha
Helix 11
AB2
A
258 271Right-handed alpha
Helix 12
AB3
A
275 289Right-handed alpha
Helix 13
AB4
A
291 317Right-handed alpha
Helix 14
AB5
A
321 330Right-handed alpha
Helix 15
AB6
B
28 44Right-handed alpha
Helix 16
AB7
B
50 64Right-handed alpha
Helix 17
AB8
B
66 89Right-handed alpha
Helix 18
AB9
B
103 130Right-handed alpha
Helix 19
AC1
B
136 159Right-handed alpha
Helix 20
AC2
B
164 175Right-handed alpha
Helix 21
AC3
B
175 190Right-handed alpha
Helix 22
AC4
B
196 225Right-handed alpha
Helix 23
AC5
B
245 254Right-handed alpha
Helix 24
AC6
B
258 270Right-handed alpha
Helix 25
AC7
B
275 289Right-handed alpha
Helix 26
AC8
B
291 317Right-handed alpha
Helix 27
AC9
B
321 331Right-handed alpha
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There are no sheets in PDB entry 5ERN
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il