Analysis of interatomic Contacts of Structural Units in PDB entry:
5ES3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ES3 entry

There are 8 chains in PDB entry 5ES3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	PHE 331
C	ALA 1	PHE 331
E	ALA 2	PHE 331
F	ASP 5	PHE 331
D	ASP 5	PHE 331
H	ASP 5	PHE 331
B	ASP 5	PHE 331
G	LYS 4	PHE 331

There are114 helices in PDB entry 5ES3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	28	41	Right-handed alpha
Helix 2	AA2	A	53	67	Right-handed alpha
Helix 3	AA3	A	68	71	Right-handed 310
Helix 4	AA4	A	81	86	Right-handed 310
Helix 5	AA5	A	104	127	Right-handed alpha
Helix 6	AA6	A	138	151	Right-handed alpha
Helix 7	AA7	A	153	155	Right-handed 310
Helix 8	AA8	A	162	178	Right-handed alpha
Helix 9	AA9	A	180	184	Right-handed 310
Helix 10	AB1	A	200	202	Right-handed 310
Helix 11	AB2	A	210	214	Right-handed alpha
Helix 12	AB3	A	226	245	Right-handed alpha
Helix 13	AB4	A	248	264	Right-handed alpha
Helix 14	AB5	A	308	327	Right-handed alpha
Helix 15	AB6	C	2	7	Right-handed alpha
Helix 16	AB7	C	28	40	Right-handed alpha
Helix 17	AB8	C	53	66	Right-handed alpha
Helix 18	AB9	C	67	71	Right-handed 310
Helix 19	AC1	C	81	86	Right-handed 310
Helix 20	AC2	C	104	127	Right-handed alpha
Helix 21	AC3	C	138	151	Right-handed alpha
Helix 22	AC4	C	153	155	Right-handed 310
Helix 23	AC5	C	162	178	Right-handed alpha
Helix 24	AC6	C	180	184	Right-handed 310
Helix 25	AC7	C	200	202	Right-handed 310
Helix 26	AC8	C	210	214	Right-handed alpha
Helix 27	AC9	C	226	245	Right-handed alpha
Helix 28	AD1	C	248	265	Right-handed alpha
Helix 29	AD2	C	308	327	Right-handed alpha
Helix 30	AD3	E	3	7	Right-handed alpha
Helix 31	AD4	E	28	41	Right-handed alpha
Helix 32	AD5	E	53	66	Right-handed alpha
Helix 33	AD6	E	67	71	Right-handed 310
Helix 34	AD7	E	81	86	Right-handed 310
Helix 35	AD8	E	104	127	Right-handed alpha
Helix 36	AD9	E	138	151	Right-handed alpha
Helix 37	AE1	E	153	155	Right-handed 310
Helix 38	AE2	E	162	178	Right-handed alpha
Helix 39	AE3	E	180	182	Right-handed 310
Helix 40	AE4	E	200	202	Right-handed 310
Helix 41	AE5	E	210	214	Right-handed alpha
Helix 42	AE6	E	226	245	Right-handed alpha
Helix 43	AE7	E	248	264	Right-handed alpha
Helix 44	AE8	E	308	327	Right-handed alpha
Helix 45	AE9	F	28	41	Right-handed alpha
Helix 46	AF1	F	53	66	Right-handed alpha
Helix 47	AF2	F	67	71	Right-handed 310
Helix 48	AF3	F	81	86	Right-handed 310
Helix 49	AF4	F	104	127	Right-handed alpha
Helix 50	AF5	F	138	151	Right-handed alpha
Helix 51	AF6	F	153	155	Right-handed 310
Helix 52	AF7	F	162	178	Right-handed alpha
Helix 53	AF8	F	180	184	Right-handed 310
Helix 54	AF9	F	200	202	Right-handed 310
Helix 55	AG1	F	210	214	Right-handed alpha
Helix 56	AG2	F	226	245	Right-handed alpha
Helix 57	AG3	F	248	264	Right-handed alpha
Helix 58	AG4	F	308	327	Right-handed alpha
Helix 59	AG5	D	28	41	Right-handed alpha
Helix 60	AG6	D	53	66	Right-handed alpha
Helix 61	AG7	D	67	71	Right-handed 310
Helix 62	AG8	D	81	86	Right-handed 310
Helix 63	AG9	D	104	127	Right-handed alpha
Helix 64	AH1	D	138	151	Right-handed alpha
Helix 65	AH2	D	153	155	Right-handed 310
Helix 66	AH3	D	162	178	Right-handed alpha
Helix 67	AH4	D	180	184	Right-handed 310
Helix 68	AH5	D	200	202	Right-handed 310
Helix 69	AH6	D	210	214	Right-handed alpha
Helix 70	AH7	D	226	245	Right-handed alpha
Helix 71	AH8	D	248	264	Right-handed alpha
Helix 72	AH9	D	308	328	Right-handed alpha
Helix 73	AI1	H	28	41	Right-handed alpha
Helix 74	AI2	H	53	67	Right-handed alpha
Helix 75	AI3	H	68	71	Right-handed 310
Helix 76	AI4	H	81	86	Right-handed 310
Helix 77	AI5	H	104	127	Right-handed alpha
Helix 78	AI6	H	138	151	Right-handed alpha
Helix 79	AI7	H	153	155	Right-handed 310
Helix 80	AI8	H	162	178	Right-handed alpha
Helix 81	AI9	H	180	184	Right-handed 310
Helix 82	AJ1	H	200	202	Right-handed 310
Helix 83	AJ2	H	210	214	Right-handed alpha
Helix 84	AJ3	H	226	245	Right-handed alpha
Helix 85	AJ4	H	248	264	Right-handed alpha
Helix 86	AJ5	H	308	327	Right-handed alpha
Helix 87	AJ6	B	28	42	Right-handed alpha
Helix 88	AJ7	B	53	67	Right-handed alpha
Helix 89	AJ8	B	68	71	Right-handed 310
Helix 90	AJ9	B	81	86	Right-handed 310
Helix 91	AK1	B	104	127	Right-handed alpha
Helix 92	AK2	B	138	151	Right-handed alpha
Helix 93	AK3	B	153	155	Right-handed 310
Helix 94	AK4	B	162	178	Right-handed alpha
Helix 95	AK5	B	180	184	Right-handed 310
Helix 96	AK6	B	200	202	Right-handed 310
Helix 97	AK7	B	210	214	Right-handed alpha
Helix 98	AK8	B	226	245	Right-handed alpha
Helix 99	AK9	B	248	264	Right-handed alpha
Helix 100	AL1	B	308	327	Right-handed alpha
Helix 101	AL2	G	28	41	Right-handed alpha
Helix 102	AL3	G	53	67	Right-handed alpha
Helix 103	AL4	G	68	71	Right-handed 310
Helix 104	AL5	G	81	86	Right-handed 310
Helix 105	AL6	G	104	127	Right-handed alpha
Helix 106	AL7	G	138	151	Right-handed alpha
Helix 107	AL8	G	153	155	Right-handed 310
Helix 108	AL9	G	162	178	Right-handed alpha
Helix 109	AM1	G	180	184	Right-handed 310
Helix 110	AM2	G	200	202	Right-handed 310
Helix 111	AM3	G	210	214	Right-handed alpha
Helix 112	AM4	G	226	245	Right-handed alpha
Helix 113	AM5	G	248	264	Right-handed alpha
Helix 114	AM6	G	308	328	Right-handed alpha

There are 32 sheets in PDB entry 5ES3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	10	first strand
Strand 2	C	298	303	anti-parallel
Strand 3	C	287	295	anti-parallel
Strand 4	C	268	275	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	78	first strand
Strand 2	A	46	50	parallel
Strand 3	A	21	25	parallel
Strand 4	A	90	93	parallel
Strand 5	A	131	134	parallel
Strand 6	A	157	159	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	189	first strand
Strand 2	A	197	198	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	208	209	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	268	275	first strand
Strand 2	A	287	295	anti-parallel
Strand 3	A	298	303	anti-parallel
Strand 4	C	8	10	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	75	78	first strand
Strand 2	C	46	50	parallel
Strand 3	C	21	25	parallel
Strand 4	C	90	93	parallel
Strand 5	C	131	134	parallel
Strand 6	C	157	159	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	188	189	first strand
Strand 2	C	197	198	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	208	209	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	10	first strand
Strand 2	G	298	303	anti-parallel
Strand 3	G	287	295	anti-parallel
Strand 4	G	268	275	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	75	78	first strand
Strand 2	E	46	50	parallel
Strand 3	E	21	25	parallel
Strand 4	E	90	93	parallel
Strand 5	E	131	134	parallel
Strand 6	E	157	159	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	184	185	first strand
Strand 2	E	204	205	anti-parallel
Strand 3	E	208	209	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	188	189	first strand
Strand 2	E	197	198	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	268	275	first strand
Strand 2	E	287	295	anti-parallel
Strand 3	E	298	303	anti-parallel
Strand 4	G	8	10	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	10	first strand
Strand 2	H	298	303	anti-parallel
Strand 3	H	287	295	anti-parallel
Strand 4	H	268	275	anti-parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	76	78	first strand
Strand 2	F	46	50	parallel
Strand 3	F	21	25	parallel
Strand 4	F	90	93	parallel
Strand 5	F	131	134	parallel
Strand 6	F	157	159	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	188	190	first strand
Strand 2	F	196	198	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	204	205	first strand
Strand 2	F	208	209	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	268	275	first strand
Strand 2	F	287	295	anti-parallel
Strand 3	F	298	303	anti-parallel
Strand 4	H	8	10	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	10	first strand
Strand 2	B	298	303	anti-parallel
Strand 3	B	287	295	anti-parallel
Strand 4	B	268	275	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	79	first strand
Strand 2	D	46	50	parallel
Strand 3	D	21	25	parallel
Strand 4	D	90	93	parallel
Strand 5	D	131	134	parallel
Strand 6	D	157	159	parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	188	189	first strand
Strand 2	D	197	198	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	204	205	first strand
Strand 2	D	208	209	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	268	275	first strand
Strand 2	D	287	295	anti-parallel
Strand 3	D	298	303	anti-parallel
Strand 4	B	8	10	anti-parallel

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There are 6 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	75	79	first strand
Strand 2	H	46	50	parallel
Strand 3	H	21	25	parallel
Strand 4	H	90	93	parallel
Strand 5	H	131	134	parallel
Strand 6	H	157	159	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	188	189	first strand
Strand 2	H	197	198	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	204	205	first strand
Strand 2	H	208	209	anti-parallel

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There are 6 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	76	78	first strand
Strand 2	B	46	50	parallel
Strand 3	B	21	25	parallel
Strand 4	B	90	93	parallel
Strand 5	B	131	134	parallel
Strand 6	B	157	159	parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	188	189	first strand
Strand 2	B	197	198	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	208	209	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	76	78	first strand
Strand 2	G	46	50	parallel
Strand 3	G	21	25	parallel
Strand 4	G	90	93	parallel
Strand 5	G	131	134	parallel
Strand 6	G	157	159	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	188	189	first strand
Strand 2	G	197	198	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	204	205	first strand
Strand 2	G	208	209	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ES3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ES3