Analysis of interatomic Contacts of Structural Units in PDB entry:
5ES9

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ES9 entry

There are 2 chains in PDB entry 5ES9 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ALA 770
B	MET 1	ALA 685

There are 48 helices in PDB entry 5ES9. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	24	Right-handed alpha
Helix 2	AA2	A	39	43	Right-handed 310
Helix 3	AA3	A	58	65	Right-handed alpha
Helix 4	AA4	A	84	92	Right-handed alpha
Helix 5	AA5	A	125	150	Right-handed alpha
Helix 6	AA6	A	167	174	Right-handed 310
Helix 7	AA7	A	175	179	Right-handed 310
Helix 8	AA8	A	180	192	Right-handed alpha
Helix 9	AA9	A	204	216	Right-handed alpha
Helix 10	AB1	A	231	247	Right-handed alpha
Helix 11	AB2	A	263	277	Right-handed alpha
Helix 12	AB3	A	288	299	Right-handed alpha
Helix 13	AB4	A	310	315	Right-handed 310
Helix 14	AB5	A	325	329	Right-handed 310
Helix 15	AB6	A	365	379	Right-handed alpha
Helix 16	AB7	A	395	407	Right-handed alpha
Helix 17	AB8	A	416	422	Right-handed alpha
Helix 18	AB9	A	422	434	Right-handed alpha
Helix 19	AC1	A	443	451	Right-handed alpha
Helix 20	AC2	A	545	552	Right-handed alpha
Helix 21	AC3	A	596	606	Right-handed alpha
Helix 22	AC4	A	638	648	Right-handed alpha
Helix 23	AC5	A	699	712	Right-handed alpha
Helix 24	AC6	A	728	743	Right-handed alpha
Helix 25	AC7	A	747	754	Right-handed alpha
Helix 26	AC8	A	756	769	Right-handed alpha
Helix 27	AC9	B	15	24	Right-handed alpha
Helix 28	AD1	B	39	43	Right-handed 310
Helix 29	AD2	B	58	65	Right-handed alpha
Helix 30	AD3	B	84	92	Right-handed alpha
Helix 31	AD4	B	125	150	Right-handed alpha
Helix 32	AD5	B	167	177	Right-handed 310
Helix 33	AD6	B	180	192	Right-handed alpha
Helix 34	AD7	B	204	216	Right-handed alpha
Helix 35	AD8	B	231	248	Right-handed alpha
Helix 36	AD9	B	263	277	Right-handed alpha
Helix 37	AE1	B	288	299	Right-handed alpha
Helix 38	AE2	B	310	315	Right-handed 310
Helix 39	AE3	B	365	379	Right-handed alpha
Helix 40	AE4	B	395	407	Right-handed alpha
Helix 41	AE5	B	416	422	Right-handed alpha
Helix 42	AE6	B	422	434	Right-handed alpha
Helix 43	AE7	B	443	449	Right-handed alpha
Helix 44	AE8	B	483	487	Right-handed 310
Helix 45	AE9	B	545	552	Right-handed alpha
Helix 46	AF1	B	596	606	Right-handed alpha
Helix 47	AF2	B	638	650	Right-handed alpha
Helix 48	AF3	B	674	678	Right-handed 310

There are 19 sheets in PDB entry 5ES9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	31	first strand
Strand 2	A	3	7	parallel
Strand 3	A	47	51	parallel
Strand 4	A	69	73	parallel
Strand 5	A	97	102	anti-parallel
Strand 6	A	112	117	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	164	165	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	227	230	first strand
Strand 2	A	220	224	anti-parallel
Strand 3	A	411	414	parallel
Strand 4	A	386	389	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	279	282	first strand
Strand 2	A	255	259	parallel
Strand 3	A	303	306	parallel
Strand 4	A	319	322	parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	351	first strand
Strand 2	A	359	364	anti-parallel
Strand 3	A	541	542	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	437	439	first strand
Strand 2	A	458	461	parallel
Strand 3	A	476	481	parallel
Strand 4	A	491	494	anti-parallel
Strand 5	A	506	507	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	553	555	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	511	516	first strand
Strand 2	A	529	535	anti-parallel
Strand 3	A	562	572	anti-parallel
Strand 4	A	578	580	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	612	619	first strand
Strand 2	A	625	632	anti-parallel
Strand 3	A	658	662	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	31	first strand
Strand 2	B	3	7	parallel
Strand 3	B	47	51	parallel
Strand 4	B	69	73	parallel
Strand 5	B	97	102	anti-parallel
Strand 6	B	112	117	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	81	82	first strand
Strand 2	B	164	165	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	227	230	first strand
Strand 2	B	220	224	anti-parallel
Strand 3	B	411	414	parallel
Strand 4	B	386	389	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	279	282	first strand
Strand 2	B	255	259	parallel
Strand 3	B	303	306	parallel
Strand 4	B	319	322	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	351	first strand
Strand 2	B	359	364	anti-parallel
Strand 3	B	541	542	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	439	first strand
Strand 2	B	458	462	parallel
Strand 3	B	476	481	parallel
Strand 4	B	491	495	anti-parallel
Strand 5	B	506	507	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	562	572	anti-parallel
Strand 4	B	553	555	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	516	first strand
Strand 2	B	529	535	anti-parallel
Strand 3	B	562	572	anti-parallel
Strand 4	B	578	583	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	588	590	first strand
Strand 2	B	593	595	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	619	first strand
Strand 2	B	625	632	anti-parallel
Strand 3	B	658	662	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ES9

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ES9