Analysis of interatomic Contacts of Structural Units in PDB entry:
5ESD

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5ESD entry

There are 4 chains in PDB entry 5ESD (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LEU 554
B	MET 1	LEU 554
C	ASN 2	LEU 554
D	ASN 2	LEU 554

There are 96 helices in PDB entry 5ESD. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	2	18	Right-handed alpha
Helix 2	AA2	A	31	44	Right-handed alpha
Helix 3	AA3	A	54	70	Right-handed alpha
Helix 4	AA4	A	80	85	Right-handed alpha
Helix 5	AA5	A	86	97	Right-handed alpha
Helix 6	AA6	A	108	112	Right-handed 310
Helix 7	AA7	A	126	130	Right-handed 310
Helix 8	AA8	A	145	166	Right-handed alpha
Helix 9	AA9	A	200	204	Right-handed 310
Helix 10	AB1	A	237	241	Right-handed 310
Helix 11	AB2	A	260	267	Right-handed 310
Helix 12	AB3	A	281	289	Right-handed alpha
Helix 13	AB4	A	325	350	Right-handed alpha
Helix 14	AB5	A	354	366	Right-handed alpha
Helix 15	AB6	A	377	386	Right-handed alpha
Helix 16	AB7	A	406	426	Right-handed alpha
Helix 17	AB8	A	440	446	Right-handed alpha
Helix 18	AB9	A	447	451	Right-handed 310
Helix 19	AC1	A	472	478	Right-handed 310
Helix 20	AC2	A	487	493	Right-handed 310
Helix 21	AC3	A	500	508	Right-handed alpha
Helix 22	AC4	A	516	518	Right-handed 310
Helix 23	AC5	A	519	526	Right-handed alpha
Helix 24	AC6	A	542	553	Right-handed alpha
Helix 25	AC7	B	2	18	Right-handed alpha
Helix 26	AC8	B	31	44	Right-handed alpha
Helix 27	AC9	B	54	70	Right-handed alpha
Helix 28	AD1	B	80	85	Right-handed alpha
Helix 29	AD2	B	86	97	Right-handed alpha
Helix 30	AD3	B	108	112	Right-handed 310
Helix 31	AD4	B	126	130	Right-handed 310
Helix 32	AD5	B	142	144	Right-handed 310
Helix 33	AD6	B	145	166	Right-handed alpha
Helix 34	AD7	B	200	204	Right-handed 310
Helix 35	AD8	B	237	241	Right-handed 310
Helix 36	AD9	B	260	267	Right-handed 310
Helix 37	AE1	B	281	290	Right-handed alpha
Helix 38	AE2	B	325	349	Right-handed alpha
Helix 39	AE3	B	354	366	Right-handed alpha
Helix 40	AE4	B	377	386	Right-handed alpha
Helix 41	AE5	B	406	425	Right-handed alpha
Helix 42	AE6	B	440	446	Right-handed alpha
Helix 43	AE7	B	447	451	Right-handed 310
Helix 44	AE8	B	488	494	Right-handed 310
Helix 45	AE9	B	500	508	Right-handed alpha
Helix 46	AF1	B	516	518	Right-handed 310
Helix 47	AF2	B	519	526	Right-handed alpha
Helix 48	AF3	B	542	553	Right-handed alpha
Helix 49	AF4	C	3	18	Right-handed alpha
Helix 50	AF5	C	34	44	Right-handed alpha
Helix 51	AF6	C	54	68	Right-handed alpha
Helix 52	AF7	C	81	97	Right-handed alpha
Helix 53	AF8	C	125	130	Right-handed alpha
Helix 54	AF9	C	142	144	Right-handed 310
Helix 55	AG1	C	145	166	Right-handed alpha
Helix 56	AG2	C	200	204	Right-handed 310
Helix 57	AG3	C	237	241	Right-handed 310
Helix 58	AG4	C	260	267	Right-handed 310
Helix 59	AG5	C	281	290	Right-handed alpha
Helix 60	AG6	C	325	350	Right-handed alpha
Helix 61	AG7	C	354	366	Right-handed alpha
Helix 62	AG8	C	377	387	Right-handed alpha
Helix 63	AG9	C	406	425	Right-handed alpha
Helix 64	AH1	C	440	446	Right-handed alpha
Helix 65	AH2	C	447	451	Right-handed 310
Helix 66	AH3	C	472	477	Right-handed 310
Helix 67	AH4	C	478	484	Right-handed 310
Helix 68	AH5	C	485	493	Right-handed alpha
Helix 69	AH6	C	500	508	Right-handed alpha
Helix 70	AH7	C	516	518	Right-handed 310
Helix 71	AH8	C	519	526	Right-handed alpha
Helix 72	AH9	C	542	553	Right-handed alpha
Helix 73	AI1	D	3	18	Right-handed alpha
Helix 74	AI2	D	34	44	Right-handed alpha
Helix 75	AI3	D	54	68	Right-handed alpha
Helix 76	AI4	D	81	97	Right-handed alpha
Helix 77	AI5	D	125	130	Right-handed alpha
Helix 78	AI6	D	142	144	Right-handed 310
Helix 79	AI7	D	145	166	Right-handed alpha
Helix 80	AI8	D	200	204	Right-handed 310
Helix 81	AI9	D	237	241	Right-handed 310
Helix 82	AJ1	D	260	267	Right-handed 310
Helix 83	AJ2	D	281	290	Right-handed alpha
Helix 84	AJ3	D	325	350	Right-handed alpha
Helix 85	AJ4	D	354	366	Right-handed alpha
Helix 86	AJ5	D	377	386	Right-handed alpha
Helix 87	AJ6	D	406	426	Right-handed alpha
Helix 88	AJ7	D	440	446	Right-handed alpha
Helix 89	AJ8	D	447	451	Right-handed 310
Helix 90	AJ9	D	473	478	Right-handed alpha
Helix 91	AK1	D	479	484	Right-handed 310
Helix 92	AK2	D	485	493	Right-handed alpha
Helix 93	AK3	D	500	508	Right-handed alpha
Helix 94	AK4	D	516	518	Right-handed 310
Helix 95	AK5	D	519	526	Right-handed alpha
Helix 96	AK6	D	542	553	Right-handed alpha

There are 18 sheets in PDB entry 5ESD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	51	first strand
Strand 2	A	22	25	parallel
Strand 3	A	73	77	parallel
Strand 4	A	100	106	parallel
Strand 5	A	175	180	parallel
Strand 6	A	132	135	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	215	first strand
Strand 2	C	213	215	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	217	221	first strand
Strand 2	A	317	321	parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	247	first strand
Strand 2	A	226	230	parallel
Strand 3	A	271	275	parallel
Strand 4	A	295	298	parallel
Strand 5	A	311	315	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	397	first strand
Strand 2	A	371	374	parallel
Strand 3	A	434	439	parallel
Strand 4	A	462	468	parallel
Strand 5	A	531	537	parallel
Strand 6	A	511	514	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	51	first strand
Strand 2	B	22	25	parallel
Strand 3	B	73	77	parallel
Strand 4	B	100	106	parallel
Strand 5	B	175	180	parallel
Strand 6	B	132	135	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	D	213	215	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	217	221	first strand
Strand 2	B	317	321	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	247	first strand
Strand 2	B	226	230	parallel
Strand 3	B	271	275	parallel
Strand 4	B	295	298	parallel
Strand 5	B	311	315	parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	394	396	first strand
Strand 2	B	371	374	parallel
Strand 3	B	434	439	parallel
Strand 4	B	462	468	parallel
Strand 5	B	531	537	parallel
Strand 6	B	511	515	parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	22	25	parallel
Strand 3	C	73	76	parallel
Strand 4	C	100	104	parallel
Strand 5	C	175	178	parallel
Strand 6	C	132	135	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	217	221	first strand
Strand 2	C	317	321	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	245	247	first strand
Strand 2	C	226	230	parallel
Strand 3	C	271	275	parallel
Strand 4	C	295	298	parallel
Strand 5	C	313	315	parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	394	396	first strand
Strand 2	C	371	374	parallel
Strand 3	C	434	439	parallel
Strand 4	C	462	468	parallel
Strand 5	C	532	537	parallel
Strand 6	C	511	515	parallel

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There are 6 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	48	51	first strand
Strand 2	D	22	25	parallel
Strand 3	D	73	76	parallel
Strand 4	D	100	104	parallel
Strand 5	D	175	178	parallel
Strand 6	D	133	135	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	217	221	first strand
Strand 2	D	317	321	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	245	247	first strand
Strand 2	D	226	230	parallel
Strand 3	D	271	275	parallel
Strand 4	D	295	298	parallel
Strand 5	D	313	315	parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	394	396	first strand
Strand 2	D	371	374	parallel
Strand 3	D	434	439	parallel
Strand 4	D	462	468	parallel
Strand 5	D	532	537	parallel
Strand 6	D	511	514	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5ESD

Analysis of interatomic Contacts of Structural Units in PDB entry:
5ESD