Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EUE entry

There are 4 chains in PDB entry 5EUE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE 57HIS 310
A
 TYR 312VAL 507
B
 TYR 60HIS 310
B
 TYR 312HIS 508
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5EUE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
76 97Right-handed alpha
Helix 2
AA2
A
108 122Right-handed alpha
Helix 3
AA3
A
133 151Right-handed alpha
Helix 4
AA4
A
167 188Right-handed alpha
Helix 5
AA5
A
202 212Right-handed alpha
Helix 6
AA6
A
227 235Right-handed alpha
Helix 7
AA7
A
256 267Right-handed alpha
Helix 8
AA8
A
281 288Right-handed alpha
Helix 9
AA9
A
326 332Right-handed alpha
Helix 10
AB1
A
355 393Right-handed alpha
Helix 11
AB2
A
416 427Right-handed alpha
Helix 12
AB3
A
445 449Right-handed 310
Helix 13
AB4
A
452 471Right-handed alpha
Helix 14
AB5
A
478 487Right-handed alpha
Helix 15
AB6
A
489 506Right-handed alpha
Helix 16
AB7
B
76 97Right-handed alpha
Helix 17
AB8
B
108 123Right-handed alpha
Helix 18
AB9
B
133 151Right-handed alpha
Helix 19
AC1
B
167 188Right-handed alpha
Helix 20
AC2
B
202 212Right-handed alpha
Helix 21
AC3
B
227 235Right-handed alpha
Helix 22
AC4
B
256 268Right-handed alpha
Helix 23
AC5
B
281 288Right-handed alpha
Helix 24
AC6
B
326 331Right-handed alpha
Helix 25
AC7
B
355 394Right-handed alpha
Helix 26
AC8
B
416 428Right-handed alpha
Helix 27
AC9
B
445 450Right-handed 310
Helix 28
AD1
B
452 471Right-handed alpha
Helix 29
AD2
B
478 488Right-handed alpha
Helix 30
AD3
B
489 505Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5EUE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 165first strand
Strand 2
A
320 324anti-parallel
Strand 3
A
304 307anti-parallel
Strand 4
A
270 274parallel
Strand 5
A
239 245parallel
Strand 6
A
193 197parallel
Strand 7
A
214 218parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 337first strand
Strand 2
A
345 347anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 400first strand
Strand 2
A
407 411anti-parallel
Strand 3
A
439 443anti-parallel
Strand 4
A
432 434anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 165first strand
Strand 2
B
320 324anti-parallel
Strand 3
B
304 307anti-parallel
Strand 4
B
270 274parallel
Strand 5
B
239 245parallel
Strand 6
B
193 197parallel
Strand 7
B
214 218parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
335 337first strand
Strand 2
B
345 347anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
399 400first strand
Strand 2
B
407 411anti-parallel
Strand 3
B
439 443anti-parallel
Strand 4
B
432 434anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il