Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EUF entry

There are 2 chains in PDB entry 5EUF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 30PRO 444
B
 TYR 29PRO 444
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5EUF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
65 69Right-handed 310
Helix 2
AA2
A
75 84Right-handed alpha
Helix 3
AA3
A
94 103Right-handed alpha
Helix 4
AA4
A
126 139Right-handed alpha
Helix 5
AA5
A
144 163Right-handed alpha
Helix 6
AA6
A
166 180Right-handed alpha
Helix 7
AA7
A
183 187Right-handed 310
Helix 8
AA8
A
192 198Right-handed alpha
Helix 9
AA9
A
200 212Right-handed alpha
Helix 10
AB1
A
213 215Right-handed 310
Helix 11
AB2
A
226 239Right-handed alpha
Helix 12
AB3
A
290 302Right-handed alpha
Helix 13
AB4
A
307 313Right-handed alpha
Helix 14
AB5
A
347 364Right-handed alpha
Helix 15
AB6
A
368 389Right-handed alpha
Helix 16
AB7
A
389 402Right-handed alpha
Helix 17
AB8
A
405 411Right-handed alpha
Helix 18
AB9
A
411 418Right-handed alpha
Helix 19
AC1
A
420 432Right-handed alpha
Helix 20
AC2
A
433 435Right-handed 310
Helix 21
AC3
B
65 69Right-handed 310
Helix 22
AC4
B
75 84Right-handed alpha
Helix 23
AC5
B
94 103Right-handed alpha
Helix 24
AC6
B
126 139Right-handed alpha
Helix 25
AC7
B
144 163Right-handed alpha
Helix 26
AC8
B
166 180Right-handed alpha
Helix 27
AC9
B
183 187Right-handed 310
Helix 28
AD1
B
192 198Right-handed alpha
Helix 29
AD2
B
200 212Right-handed alpha
Helix 30
AD3
B
213 215Right-handed 310
Helix 31
AD4
B
226 239Right-handed alpha
Helix 32
AD5
B
290 302Right-handed alpha
Helix 33
AD6
B
347 364Right-handed alpha
Helix 34
AD7
B
368 387Right-handed alpha
Helix 35
AD8
B
389 402Right-handed alpha
Helix 36
AD9
B
405 411Right-handed alpha
Helix 37
AE1
B
411 418Right-handed alpha
Helix 38
AE2
B
420 432Right-handed alpha
Helix 39
AE3
B
433 435Right-handed 310
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There are 3 sheets in PDB entry 5EUF. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 37first strand
Strand 2
A
43 48anti-parallel
Strand 3
A
217 223parallel
Strand 4
A
55 62anti-parallel
Strand 5
A
116 123anti-parallel
Strand 6
A
106 111anti-parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
320 327first strand
Strand 2
A
334 342anti-parallel
Strand 3
A
276 283anti-parallel
Strand 4
A
437 443anti-parallel
Strand 5
A
263 268parallel
Strand 6
B
263 268anti-parallel
Strand 7
B
437 443parallel
Strand 8
B
276 283anti-parallel
Strand 9
B
334 342anti-parallel
Strand 10
B
320 327anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
34 37first strand
Strand 2
B
43 48anti-parallel
Strand 3
B
217 223parallel
Strand 4
B
55 62anti-parallel
Strand 5
B
116 123anti-parallel
Strand 6
B
106 111anti-parallel
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