Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EUM entry

There are 4 chains in PDB entry 5EUM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 333GLY 358
A
 GLU 360GLY 587
B
 LYS 333GLY 358
B
 GLU 360GLY 587
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5EUM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
386 395Right-handed alpha
Helix 2
AA2
A
413 415Right-handed 310
Helix 3
AA3
A
416 423Right-handed alpha
Helix 4
AA4
A
437 444Right-handed alpha
Helix 5
AA5
A
451 462Right-handed alpha
Helix 6
AA6
A
464 471Right-handed alpha
Helix 7
AA7
A
473 477Right-handed 310
Helix 8
AA8
A
480 484Right-handed 310
Helix 9
AA9
A
487 503Right-handed alpha
Helix 10
AB1
A
520 532Right-handed alpha
Helix 11
AB2
A
543 550Right-handed alpha
Helix 12
AB3
A
566 574Right-handed alpha
Helix 13
AB4
A
575 583Right-handed alpha
Helix 14
AB5
B
386 395Right-handed alpha
Helix 15
AB6
B
413 415Right-handed 310
Helix 16
AB7
B
416 423Right-handed alpha
Helix 17
AB8
B
437 444Right-handed alpha
Helix 18
AB9
B
451 462Right-handed alpha
Helix 19
AC1
B
464 471Right-handed alpha
Helix 20
AC2
B
473 477Right-handed 310
Helix 21
AC3
B
480 484Right-handed 310
Helix 22
AC4
B
487 503Right-handed alpha
Helix 23
AC5
B
520 532Right-handed alpha
Helix 24
AC6
B
543 550Right-handed alpha
Helix 25
AC7
B
566 574Right-handed alpha
Helix 26
AC8
B
575 583Right-handed alpha
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There are 4 sheets in PDB entry 5EUM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
364 371first strand
Strand 2
A
347 354anti-parallel
Strand 3
A
402 407anti-parallel
Strand 4
A
410 411anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
424 427first strand
Strand 2
A
506 510parallel
Strand 3
A
536 540parallel
Strand 4
A
376 380parallel
Strand 5
A
552 557parallel
Strand 6
A
560 565anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 371first strand
Strand 2
B
347 354anti-parallel
Strand 3
B
402 407anti-parallel
Strand 4
B
410 411anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
424 427first strand
Strand 2
B
506 510parallel
Strand 3
B
536 540parallel
Strand 4
B
376 380parallel
Strand 5
B
552 557parallel
Strand 6
B
560 565anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il