Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EUO entry

There are 10 chains in PDB entry 5EUO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 1	TRP 274
B	MET 0	MET 99
C	GLY 1	GLU 275
D	MET 0	MET 99
E	LEU 4	ASN 193
F	GLY 1	ALA 239
G	LEU 4	SER 194
H	GLY 1	GLY 237
I	GLY 1	LEU 9
J	GLY 1	LEU 9

There are 23 helices in PDB entry 5EUO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	49	55	Right-handed 310
Helix 2	AA2	A	56	85	Right-handed alpha
Helix 3	AA3	A	137	150	Right-handed alpha
Helix 4	AA4	A	151	161	Right-handed alpha
Helix 5	AA5	A	162	175	Right-handed alpha
Helix 6	AA6	A	175	180	Right-handed alpha
Helix 7	AA7	A	253	257	Right-handed 310
Helix 8	AA8	C	49	55	Right-handed 310
Helix 9	AA9	C	56	85	Right-handed alpha
Helix 10	AB1	C	137	150	Right-handed alpha
Helix 11	AB2	C	151	162	Right-handed alpha
Helix 12	AB3	C	162	175	Right-handed alpha
Helix 13	AB4	C	175	180	Right-handed alpha
Helix 14	AB5	C	253	255	Right-handed 310
Helix 15	AB6	E	96	98	Right-handed 310
Helix 16	AB7	F	112	116	Right-handed 310
Helix 17	AB8	F	127	135	Right-handed alpha
Helix 18	AB9	F	194	198	Right-handed alpha
Helix 19	AC1	G	81	85	Right-handed 310
Helix 20	AC2	G	186	190	Right-handed 310
Helix 21	AC3	H	112	116	Right-handed 310
Helix 22	AC4	H	127	134	Right-handed alpha
Helix 23	AC5	H	194	198	Right-handed alpha

There are 35 sheets in PDB entry 5EUO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	46	47	first strand
Strand 2	A	31	37	anti-parallel
Strand 3	A	21	28	anti-parallel
Strand 4	A	3	12	anti-parallel
Strand 5	A	94	103	anti-parallel
Strand 6	A	109	118	anti-parallel
Strand 7	A	121	126	anti-parallel
Strand 8	A	133	135	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	228	230	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	188	193	first strand
Strand 2	A	198	208	anti-parallel
Strand 3	A	241	250	anti-parallel
Strand 4	A	234	235	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	259	262	anti-parallel
Strand 3	A	270	272	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	50	51	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	6	11	first strand
Strand 2	B	21	30	anti-parallel
Strand 3	B	62	70	anti-parallel
Strand 4	B	55	56	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	45	first strand
Strand 2	B	36	41	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	91	94	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	31	37	anti-parallel
Strand 3	C	21	28	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	109	118	anti-parallel
Strand 7	C	121	126	anti-parallel
Strand 8	C	133	135	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	228	230	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	193	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	270	272	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	36	41	anti-parallel
Strand 3	D	78	83	anti-parallel
Strand 4	D	91	94	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	20	25	anti-parallel
Strand 3	E	72	77	anti-parallel
Strand 4	E	62	66	anti-parallel
Strand 5	E	56	59	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	15	first strand
Strand 2	E	108	113	parallel
Strand 3	E	86	94	anti-parallel
Strand 4	E	30	38	anti-parallel
Strand 5	E	45	50	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	15	first strand
Strand 2	E	108	113	parallel
Strand 3	E	86	94	anti-parallel
Strand 4	E	103	104	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	127	first strand
Strand 2	E	135	140	anti-parallel
Strand 3	E	171	180	anti-parallel
Strand 4	E	156	158	anti-parallel

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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	122	127	first strand
Strand 2	E	135	140	anti-parallel
Strand 3	E	171	180	anti-parallel
Strand 4	E	162	166	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	2	3	first strand
Strand 2	F	22	23	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	12	first strand
Strand 2	F	105	110	parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	29	35	anti-parallel
Strand 5	F	42	49	anti-parallel
Strand 6	F	52	55	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	8	12	first strand
Strand 2	F	105	110	parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	100	101	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	17	19	first strand
Strand 2	F	74	76	anti-parallel
Strand 3	F	62	64	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	146	anti-parallel
Strand 3	F	184	193	anti-parallel
Strand 4	F	166	168	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	120	124	first strand
Strand 2	F	136	146	anti-parallel
Strand 3	F	184	193	anti-parallel
Strand 4	F	173	174	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	160	162	first strand
Strand 2	F	151	157	anti-parallel
Strand 3	F	203	210	anti-parallel
Strand 4	F	229	236	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	6	8	first strand
Strand 2	G	20	25	anti-parallel
Strand 3	G	72	77	anti-parallel
Strand 4	G	62	66	anti-parallel
Strand 5	G	56	59	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	15	first strand
Strand 2	G	108	113	parallel
Strand 3	G	86	94	anti-parallel
Strand 4	G	30	38	anti-parallel
Strand 5	G	45	50	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	11	15	first strand
Strand 2	G	108	113	parallel
Strand 3	G	86	94	anti-parallel
Strand 4	G	103	104	anti-parallel

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There are 8 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	157	158	first strand
Strand 2	G	171	179	anti-parallel
Strand 3	G	135	140	anti-parallel
Strand 4	G	122	128	anti-parallel
Strand 5	H	120	125	anti-parallel
Strand 6	H	136	146	anti-parallel
Strand 7	H	184	193	anti-parallel
Strand 8	H	166	168	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	162	166	first strand
Strand 2	G	171	179	anti-parallel
Strand 3	G	135	140	anti-parallel
Strand 4	G	122	128	anti-parallel
Strand 5	H	120	125	anti-parallel
Strand 6	H	136	146	anti-parallel
Strand 7	H	184	193	anti-parallel
Strand 8	H	173	174	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	2	5	first strand
Strand 2	H	17	23	anti-parallel
Strand 3	H	74	76	anti-parallel
Strand 4	H	62	64	anti-parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	12	first strand
Strand 2	H	105	110	parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	29	35	anti-parallel
Strand 5	H	41	47	anti-parallel
Strand 6	H	54	55	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	8	12	first strand
Strand 2	H	105	110	parallel
Strand 3	H	85	92	anti-parallel
Strand 4	H	100	101	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	160	162	first strand
Strand 2	H	151	157	anti-parallel
Strand 3	H	203	210	anti-parallel
Strand 4	H	229	236	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EUO

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUO