Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EUV entry

There are 2 chains in PDB entry 5EUV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	GLY 731
B	MET 1	SER 532

There are 31 helices in PDB entry 5EUV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	44	49	Right-handed 310
Helix 2	AA2	A	61	65	Right-handed 310
Helix 3	AA3	A	104	107	Right-handed 310
Helix 4	AA4	A	278	291	Right-handed alpha
Helix 5	AA5	A	306	317	Right-handed alpha
Helix 6	AA6	A	332	351	Right-handed alpha
Helix 7	AA7	A	369	384	Right-handed alpha
Helix 8	AA8	A	413	417	Right-handed 310
Helix 9	AA9	A	429	435	Right-handed alpha
Helix 10	AB1	A	448	452	Right-handed 310
Helix 11	AB2	A	459	480	Right-handed alpha
Helix 12	AB3	A	521	527	Right-handed alpha
Helix 13	AB4	A	528	529	Right-handed 310
Helix 14	AB5	A	530	534	Right-handed 310
Helix 15	AB6	A	600	604	Right-handed 310
Helix 16	AB7	B	44	49	Right-handed 310
Helix 17	AB8	B	61	65	Right-handed 310
Helix 18	AB9	B	104	107	Right-handed 310
Helix 19	AC1	B	278	291	Right-handed alpha
Helix 20	AC2	B	306	317	Right-handed alpha
Helix 21	AC3	B	332	351	Right-handed alpha
Helix 22	AC4	B	369	384	Right-handed alpha
Helix 23	AC5	B	413	417	Right-handed 310
Helix 24	AC6	B	429	435	Right-handed alpha
Helix 25	AC7	B	448	452	Right-handed 310
Helix 26	AC8	B	459	480	Right-handed alpha
Helix 27	AC9	B	521	527	Right-handed alpha
Helix 28	AD1	B	528	529	Right-handed 310
Helix 29	AD2	B	530	534	Right-handed 310
Helix 30	AD3	B	599	604	Right-handed alpha
Helix 31	AD4	B	605	607	Right-handed 310

There are 24 sheets in PDB entry 5EUV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	6	first strand
Strand 2	A	145	150	anti-parallel
Strand 3	A	68	73	anti-parallel
Strand 4	A	99	102	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	27	29	first strand
Strand 2	A	11	15	anti-parallel
Strand 3	A	51	59	anti-parallel
Strand 4	A	111	119	anti-parallel
Strand 5	A	80	84	anti-parallel
Strand 6	A	87	92	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	155	161	first strand
Strand 2	A	170	178	anti-parallel
Strand 3	A	204	209	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	200	first strand
Strand 2	A	184	190	anti-parallel
Strand 3	A	223	228	anti-parallel
Strand 4	A	235	240	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	245	248	first strand
Strand 2	A	251	254	anti-parallel
Strand 3	A	257	258	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	388	390	first strand
Strand 2	A	356	360	parallel
Strand 3	A	319	323	parallel
Strand 4	A	297	300	parallel
Strand 5	A	261	266	parallel
Strand 6	A	485	488	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	405	407	first strand
Strand 2	A	442	444	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	494	495	first strand
Strand 2	A	506	507	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	537	539	first strand
Strand 2	A	556	560	anti-parallel
Strand 3	A	591	593	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	572	576	first strand
Strand 2	A	564	569	anti-parallel
Strand 3	A	613	619	anti-parallel
Strand 4	A	622	629	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	637	642	first strand
Strand 2	A	654	662	anti-parallel
Strand 3	A	698	705	anti-parallel
Strand 4	A	684	686	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	646	647	first strand
Strand 2	A	724	730	parallel
Strand 3	A	710	717	anti-parallel
Strand 4	A	675	681	anti-parallel
Strand 5	A	691	693	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	6	first strand
Strand 2	B	145	150	anti-parallel
Strand 3	B	68	73	anti-parallel
Strand 4	B	99	102	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	27	29	first strand
Strand 2	B	11	15	anti-parallel
Strand 3	B	51	59	anti-parallel
Strand 4	B	111	119	anti-parallel
Strand 5	B	80	84	anti-parallel
Strand 6	B	87	92	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	155	161	first strand
Strand 2	B	170	178	anti-parallel
Strand 3	B	204	209	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	193	200	first strand
Strand 2	B	184	190	anti-parallel
Strand 3	B	223	228	anti-parallel
Strand 4	B	235	240	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	245	248	first strand
Strand 2	B	251	254	anti-parallel
Strand 3	B	257	258	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	390	first strand
Strand 2	B	356	360	parallel
Strand 3	B	319	323	parallel
Strand 4	B	297	300	parallel
Strand 5	B	261	266	parallel
Strand 6	B	485	488	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	405	408	first strand
Strand 2	B	442	446	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	494	495	first strand
Strand 2	B	506	507	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	537	539	first strand
Strand 2	B	556	560	anti-parallel
Strand 3	B	591	593	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	572	576	first strand
Strand 2	B	564	569	anti-parallel
Strand 3	B	613	619	anti-parallel
Strand 4	B	622	629	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	637	642	first strand
Strand 2	B	654	662	anti-parallel
Strand 3	B	698	705	anti-parallel
Strand 4	B	684	686	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	646	647	first strand
Strand 2	B	724	730	parallel
Strand 3	B	710	717	anti-parallel
Strand 4	B	675	681	anti-parallel
Strand 5	B	691	693	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EUV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EUV