Analysis of interatomic Contacts of Structural Units in PDB entry:
5EVJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EVJ entry

There are 2 chains in PDB entry 5EVJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 51LYS 356
B
 ALA 51ASP 351
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 23 helices in PDB entry 5EVJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
53 62Right-handed alpha
Helix 2
AA2
A
64 70Right-handed alpha
Helix 3
AA3
A
95 105Right-handed alpha
Helix 4
AA4
A
117 127Right-handed alpha
Helix 5
AA5
A
127 135Right-handed alpha
Helix 6
AA6
A
149 153Right-handed 310
Helix 7
AA7
A
171 175Right-handed 310
Helix 8
AA8
A
177 188Right-handed alpha
Helix 9
AA9
A
207 213Right-handed alpha
Helix 10
AB1
A
226 238Right-handed alpha
Helix 11
AB2
A
255 262Right-handed alpha
Helix 12
AB3
A
321 330Right-handed alpha
Helix 13
AB4
A
333 335Right-handed 310
Helix 14
AB5
B
53 62Right-handed alpha
Helix 15
AB6
B
64 70Right-handed alpha
Helix 16
AB7
B
95 105Right-handed alpha
Helix 17
AB8
B
117 135Right-handed alpha
Helix 18
AB9
B
171 175Right-handed 310
Helix 19
AC1
B
177 188Right-handed alpha
Helix 20
AC2
B
207 213Right-handed alpha
Helix 21
AC3
B
227 237Right-handed alpha
Helix 22
AC4
B
321 330Right-handed alpha
Helix 23
AC5
B
333 335Right-handed 310
Back to top of page

There are 8 sheets in PDB entry 5EVJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 147first strand
Strand 2
A
110 115parallel
Strand 3
A
86 90parallel
Strand 4
A
163 169parallel
Strand 5
A
189 202parallel
Strand 6
A
266 274anti-parallel
Strand 7
A
243 249anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
285 286first strand
Strand 2
A
348 349anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
318 320first strand
Strand 2
A
289 293anti-parallel
Strand 3
A
337 340anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
303 307first strand
Strand 2
A
310 313anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
110 115parallel
Strand 3
B
86 90parallel
Strand 4
B
163 169parallel
Strand 5
B
189 202parallel
Strand 6
B
225 226parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 147first strand
Strand 2
B
110 115parallel
Strand 3
B
86 90parallel
Strand 4
B
163 169parallel
Strand 5
B
189 202parallel
Strand 6
B
266 274anti-parallel
Strand 7
B
243 250anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
318 320first strand
Strand 2
B
289 293anti-parallel
Strand 3
B
337 340anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
303 307first strand
Strand 2
B
310 313anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il