Analysis of interatomic Contacts of Structural Units in PDB entry:
5EVM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EVM entry

There are 6 chains in PDB entry 5EVM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 27	ASP 525
B	ILE 27	ASP 482
C	ILE 27	ASP 482
D	ILE 27	ASP 482
E	ILE 27	ASP 482
F	ILE 27	ASP 482

There are115 helices in PDB entry 5EVM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	29	35	Right-handed alpha
Helix 2	AA2	A	65	69	Right-handed 310
Helix 3	AA3	A	74	99	Right-handed alpha
Helix 4	AA4	A	117	121	Right-handed alpha
Helix 5	AA5	A	125	146	Right-handed alpha
Helix 6	AA6	A	147	154	Right-handed alpha
Helix 7	AA7	A	175	182	Right-handed alpha
Helix 8	AA8	A	183	187	Right-handed 310
Helix 9	AA9	A	193	215	Right-handed alpha
Helix 10	AB1	A	228	232	Right-handed alpha
Helix 11	AB2	A	233	236	Right-handed 310
Helix 12	AB3	A	238	245	Right-handed alpha
Helix 13	AB4	A	252	259	Right-handed alpha
Helix 14	AB5	A	328	331	Right-handed 310
Helix 15	AB6	A	349	356	Right-handed alpha
Helix 16	AB7	A	357	358	Right-handed 310
Helix 17	AB8	A	359	363	Right-handed 310
Helix 18	AB9	A	437	442	Right-handed alpha
Helix 19	AC1	A	452	525	Right-handed alpha
Helix 20	AC2	B	29	35	Right-handed alpha
Helix 21	AC3	B	65	69	Right-handed 310
Helix 22	AC4	B	74	99	Right-handed alpha
Helix 23	AC5	B	117	121	Right-handed alpha
Helix 24	AC6	B	125	146	Right-handed alpha
Helix 25	AC7	B	147	154	Right-handed alpha
Helix 26	AC8	B	175	182	Right-handed alpha
Helix 27	AC9	B	183	187	Right-handed 310
Helix 28	AD1	B	193	215	Right-handed alpha
Helix 29	AD2	B	228	232	Right-handed alpha
Helix 30	AD3	B	233	236	Right-handed 310
Helix 31	AD4	B	238	245	Right-handed alpha
Helix 32	AD5	B	252	259	Right-handed alpha
Helix 33	AD6	B	328	331	Right-handed 310
Helix 34	AD7	B	349	356	Right-handed alpha
Helix 35	AD8	B	357	358	Right-handed 310
Helix 36	AD9	B	359	363	Right-handed 310
Helix 37	AE1	B	437	442	Right-handed alpha
Helix 38	AE2	B	452	482	Right-handed alpha
Helix 39	AE3	C	29	35	Right-handed alpha
Helix 40	AE4	C	65	69	Right-handed 310
Helix 41	AE5	C	74	99	Right-handed alpha
Helix 42	AE6	C	117	121	Right-handed alpha
Helix 43	AE7	C	125	146	Right-handed alpha
Helix 44	AE8	C	147	154	Right-handed alpha
Helix 45	AE9	C	175	182	Right-handed alpha
Helix 46	AF1	C	183	187	Right-handed 310
Helix 47	AF2	C	193	215	Right-handed alpha
Helix 48	AF3	C	228	232	Right-handed alpha
Helix 49	AF4	C	233	236	Right-handed 310
Helix 50	AF5	C	238	246	Right-handed alpha
Helix 51	AF6	C	252	259	Right-handed alpha
Helix 52	AF7	C	328	331	Right-handed 310
Helix 53	AF8	C	349	356	Right-handed alpha
Helix 54	AF9	C	357	358	Right-handed 310
Helix 55	AG1	C	359	363	Right-handed 310
Helix 56	AG2	C	387	390	Right-handed 310
Helix 57	AG3	C	437	442	Right-handed alpha
Helix 58	AG4	C	452	482	Right-handed alpha
Helix 59	AG5	D	29	36	Right-handed alpha
Helix 60	AG6	D	65	69	Right-handed 310
Helix 61	AG7	D	74	99	Right-handed alpha
Helix 62	AG8	D	117	121	Right-handed alpha
Helix 63	AG9	D	125	146	Right-handed alpha
Helix 64	AH1	D	147	154	Right-handed alpha
Helix 65	AH2	D	175	182	Right-handed alpha
Helix 66	AH3	D	183	187	Right-handed 310
Helix 67	AH4	D	193	215	Right-handed alpha
Helix 68	AH5	D	228	232	Right-handed alpha
Helix 69	AH6	D	233	236	Right-handed 310
Helix 70	AH7	D	238	245	Right-handed alpha
Helix 71	AH8	D	250	259	Right-handed alpha
Helix 72	AH9	D	328	331	Right-handed 310
Helix 73	AI1	D	349	356	Right-handed alpha
Helix 74	AI2	D	357	358	Right-handed 310
Helix 75	AI3	D	359	363	Right-handed 310
Helix 76	AI4	D	437	442	Right-handed alpha
Helix 77	AI5	D	452	482	Right-handed alpha
Helix 78	AI6	E	29	36	Right-handed alpha
Helix 79	AI7	E	65	69	Right-handed 310
Helix 80	AI8	E	74	99	Right-handed alpha
Helix 81	AI9	E	117	121	Right-handed alpha
Helix 82	AJ1	E	125	146	Right-handed alpha
Helix 83	AJ2	E	147	154	Right-handed alpha
Helix 84	AJ3	E	175	182	Right-handed alpha
Helix 85	AJ4	E	183	187	Right-handed 310
Helix 86	AJ5	E	193	215	Right-handed alpha
Helix 87	AJ6	E	228	232	Right-handed alpha
Helix 88	AJ7	E	233	236	Right-handed 310
Helix 89	AJ8	E	238	246	Right-handed alpha
Helix 90	AJ9	E	253	259	Right-handed alpha
Helix 91	AK1	E	328	331	Right-handed 310
Helix 92	AK2	E	349	356	Right-handed alpha
Helix 93	AK3	E	357	358	Right-handed 310
Helix 94	AK4	E	359	363	Right-handed 310
Helix 95	AK5	E	437	442	Right-handed alpha
Helix 96	AK6	E	452	482	Right-handed alpha
Helix 97	AK7	F	29	36	Right-handed alpha
Helix 98	AK8	F	65	69	Right-handed 310
Helix 99	AK9	F	74	99	Right-handed alpha
Helix 100	AL1	F	117	121	Right-handed alpha
Helix 101	AL2	F	125	146	Right-handed alpha
Helix 102	AL3	F	147	154	Right-handed alpha
Helix 103	AL4	F	175	182	Right-handed alpha
Helix 104	AL5	F	183	187	Right-handed 310
Helix 105	AL6	F	193	215	Right-handed alpha
Helix 106	AL7	F	228	232	Right-handed alpha
Helix 107	AL8	F	233	236	Right-handed 310
Helix 108	AL9	F	238	246	Right-handed alpha
Helix 109	AM1	F	254	259	Right-handed alpha
Helix 110	AM2	F	328	331	Right-handed 310
Helix 111	AM3	F	349	356	Right-handed alpha
Helix 112	AM4	F	357	358	Right-handed 310
Helix 113	AM5	F	359	363	Right-handed 310
Helix 114	AM6	F	437	442	Right-handed alpha
Helix 115	AM7	F	452	482	Right-handed alpha

There are 31 sheets in PDB entry 5EVM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	333	first strand
Strand 2	A	337	340	anti-parallel
Strand 3	A	38	48	parallel
Strand 4	A	286	298	anti-parallel
Strand 5	A	315	319	anti-parallel
Strand 6	A	322	326	anti-parallel
Strand 7	A	345	346	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	158	161	first strand
Strand 2	A	169	173	anti-parallel
Strand 3	A	53	60	parallel
Strand 4	A	275	282	anti-parallel
Strand 5	A	263	270	anti-parallel
Strand 6	A	226	227	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	103	first strand
Strand 2	A	113	116	anti-parallel
Strand 3	C	427	428	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	C	376	379	anti-parallel
Strand 3	C	382	385	anti-parallel
Strand 4	C	410	412	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	301	302	first strand
Strand 2	A	307	310	anti-parallel
Strand 3	A	365	367	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	410	412	first strand
Strand 2	A	382	385	anti-parallel
Strand 3	A	376	379	anti-parallel
Strand 4	B	123	124	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	392	394	first strand
Strand 2	A	419	422	anti-parallel
Strand 3	A	425	428	anti-parallel
Strand 4	B	113	116	parallel
Strand 5	B	101	103	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	161	first strand
Strand 2	B	169	173	anti-parallel
Strand 3	B	38	60	parallel
Strand 4	B	275	298	anti-parallel
Strand 5	B	337	340	first strand
Strand 6	B	332	333	anti-parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	226	227	first strand
Strand 2	B	263	270	anti-parallel
Strand 3	B	275	298	anti-parallel
Strand 4	B	38	60	anti-parallel
Strand 5	B	315	319	first strand
Strand 6	B	322	326	anti-parallel
Strand 7	B	345	346	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	301	302	first strand
Strand 2	B	307	310	anti-parallel
Strand 3	B	365	367	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	412	first strand
Strand 2	B	382	385	anti-parallel
Strand 3	B	376	379	anti-parallel
Strand 4	C	123	124	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	392	394	first strand
Strand 2	B	419	422	anti-parallel
Strand 3	B	426	428	anti-parallel
Strand 4	C	113	116	parallel
Strand 5	C	101	103	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	158	161	first strand
Strand 2	C	169	173	anti-parallel
Strand 3	C	38	60	parallel
Strand 4	C	275	298	anti-parallel
Strand 5	C	337	340	first strand
Strand 6	C	332	333	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	226	227	first strand
Strand 2	C	263	270	anti-parallel
Strand 3	C	275	298	anti-parallel
Strand 4	C	38	60	anti-parallel
Strand 5	C	315	319	first strand
Strand 6	C	322	326	anti-parallel
Strand 7	C	345	346	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	307	310	anti-parallel
Strand 3	C	365	367	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	392	394	first strand
Strand 2	C	420	422	anti-parallel

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There are 7 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	332	333	first strand
Strand 2	D	337	340	anti-parallel
Strand 3	D	38	48	parallel
Strand 4	D	286	298	anti-parallel
Strand 5	D	315	319	anti-parallel
Strand 6	D	322	326	anti-parallel
Strand 7	D	345	346	anti-parallel

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There are 6 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	158	162	first strand
Strand 2	D	168	173	anti-parallel
Strand 3	D	53	60	parallel
Strand 4	D	275	282	anti-parallel
Strand 5	D	263	270	anti-parallel
Strand 6	D	226	227	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	101	103	first strand
Strand 2	D	113	116	anti-parallel
Strand 3	F	425	428	parallel
Strand 4	F	420	422	anti-parallel
Strand 5	F	392	393	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	123	124	first strand
Strand 2	F	376	379	anti-parallel
Strand 3	F	382	385	anti-parallel
Strand 4	F	410	412	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	301	302	first strand
Strand 2	D	307	310	anti-parallel
Strand 3	D	365	367	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	410	412	first strand
Strand 2	D	382	385	anti-parallel
Strand 3	D	376	379	anti-parallel
Strand 4	E	123	124	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	392	393	first strand
Strand 2	D	419	422	anti-parallel
Strand 3	D	425	428	anti-parallel
Strand 4	E	113	116	parallel
Strand 5	E	101	103	anti-parallel

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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	332	333	first strand
Strand 2	E	337	340	anti-parallel
Strand 3	E	38	48	parallel
Strand 4	E	286	298	anti-parallel
Strand 5	E	315	319	anti-parallel
Strand 6	E	322	326	anti-parallel
Strand 7	E	345	346	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	158	162	first strand
Strand 2	E	168	173	anti-parallel
Strand 3	E	53	60	parallel
Strand 4	E	275	282	anti-parallel
Strand 5	E	263	270	anti-parallel
Strand 6	E	226	227	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	301	302	first strand
Strand 2	E	307	310	anti-parallel
Strand 3	E	365	367	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	410	412	first strand
Strand 2	E	382	385	anti-parallel
Strand 3	E	376	379	anti-parallel
Strand 4	F	123	124	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	392	394	first strand
Strand 2	E	419	422	anti-parallel
Strand 3	E	425	428	anti-parallel
Strand 4	F	113	116	parallel
Strand 5	F	101	103	anti-parallel

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There are 6 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	160	first strand
Strand 2	F	170	173	anti-parallel
Strand 3	F	38	60	parallel
Strand 4	F	275	298	anti-parallel
Strand 5	F	337	340	first strand
Strand 6	F	332	333	anti-parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	226	227	first strand
Strand 2	F	263	270	anti-parallel
Strand 3	F	275	298	anti-parallel
Strand 4	F	38	60	anti-parallel
Strand 5	F	315	319	first strand
Strand 6	F	322	326	anti-parallel
Strand 7	F	345	346	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	301	302	first strand
Strand 2	F	307	310	anti-parallel
Strand 3	F	365	367	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EVM

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EVM