Analysis of interatomic Contacts of Structural Units in PDB entry:
5EW5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EW5 entry

There are 8 chains in PDB entry 5EW5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 85	ARG 580
B	ALA 85	ARG 580
C	ALA 85	ARG 580
D	ALA 85	ARG 580
E	LEU 3	GLN 85
F	LEU 3	GLN 85
G	SER 6	SER 81
H	SER 6	GLY 79

There are 82 helices in PDB entry 5EW5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	113	125	Right-handed alpha
Helix 2	AA2	A	141	149	Right-handed alpha
Helix 3	AA3	A	163	165	Right-handed 310
Helix 4	AA4	A	276	280	Right-handed 310
Helix 5	AA5	A	293	314	Right-handed alpha
Helix 6	AA6	A	315	376	Right-handed alpha
Helix 7	AA7	A	377	382	Right-handed 310
Helix 8	AA8	A	386	453	Right-handed alpha
Helix 9	AA9	A	469	474	Right-handed alpha
Helix 10	AB1	A	483	491	Right-handed alpha
Helix 11	AB2	A	497	511	Right-handed alpha
Helix 12	AB3	A	515	519	Right-handed 310
Helix 13	AB4	A	520	529	Right-handed alpha
Helix 14	AB5	A	536	540	Right-handed 310
Helix 15	AB6	A	571	579	Right-handed alpha
Helix 16	AB7	B	113	125	Right-handed alpha
Helix 17	AB8	B	141	149	Right-handed alpha
Helix 18	AB9	B	162	166	Right-handed alpha
Helix 19	AC1	B	276	280	Right-handed 310
Helix 20	AC2	B	293	314	Right-handed alpha
Helix 21	AC3	B	315	376	Right-handed alpha
Helix 22	AC4	B	377	382	Right-handed 310
Helix 23	AC5	B	386	451	Right-handed alpha
Helix 24	AC6	B	452	455	Right-handed 310
Helix 25	AC7	B	469	474	Right-handed alpha
Helix 26	AC8	B	483	491	Right-handed alpha
Helix 27	AC9	B	497	511	Right-handed alpha
Helix 28	AD1	B	515	519	Right-handed 310
Helix 29	AD2	B	520	528	Right-handed alpha
Helix 30	AD3	B	536	540	Right-handed 310
Helix 31	AD4	B	571	579	Right-handed alpha
Helix 32	AD5	C	113	123	Right-handed alpha
Helix 33	AD6	C	141	147	Right-handed alpha
Helix 34	AD7	C	163	165	Right-handed 310
Helix 35	AD8	C	169	173	Right-handed 310
Helix 36	AD9	C	293	315	Right-handed alpha
Helix 37	AE1	C	315	376	Right-handed alpha
Helix 38	AE2	C	377	380	Right-handed 310
Helix 39	AE3	C	385	451	Right-handed alpha
Helix 40	AE4	C	452	455	Right-handed 310
Helix 41	AE5	C	469	474	Right-handed alpha
Helix 42	AE6	C	483	491	Right-handed alpha
Helix 43	AE7	C	497	511	Right-handed alpha
Helix 44	AE8	C	520	528	Right-handed alpha
Helix 45	AE9	C	536	540	Right-handed 310
Helix 46	AF1	C	554	558	Right-handed 310
Helix 47	AF2	C	571	579	Right-handed alpha
Helix 48	AF3	D	113	123	Right-handed alpha
Helix 49	AF4	D	141	147	Right-handed alpha
Helix 50	AF5	D	163	165	Right-handed 310
Helix 51	AF6	D	169	173	Right-handed 310
Helix 52	AF7	D	293	315	Right-handed alpha
Helix 53	AF8	D	315	376	Right-handed alpha
Helix 54	AF9	D	377	380	Right-handed 310
Helix 55	AG1	D	385	451	Right-handed alpha
Helix 56	AG2	D	452	455	Right-handed 310
Helix 57	AG3	D	469	474	Right-handed alpha
Helix 58	AG4	D	483	491	Right-handed alpha
Helix 59	AG5	D	497	512	Right-handed alpha
Helix 60	AG6	D	520	528	Right-handed alpha
Helix 61	AG7	D	536	540	Right-handed 310
Helix 62	AG8	D	554	558	Right-handed 310
Helix 63	AG9	D	571	579	Right-handed alpha
Helix 64	AH1	E	6	10	Right-handed 310
Helix 65	AH2	E	11	25	Right-handed alpha
Helix 66	AH3	E	29	45	Right-handed alpha
Helix 67	AH4	E	50	55	Right-handed alpha
Helix 68	AH5	E	63	78	Right-handed alpha
Helix 69	AH6	F	6	10	Right-handed 310
Helix 70	AH7	F	11	25	Right-handed alpha
Helix 71	AH8	F	29	45	Right-handed alpha
Helix 72	AH9	F	50	55	Right-handed alpha
Helix 73	AI1	F	63	78	Right-handed alpha
Helix 74	AI2	G	6	10	Right-handed 310
Helix 75	AI3	G	11	25	Right-handed alpha
Helix 76	AI4	G	29	45	Right-handed alpha
Helix 77	AI5	G	50	55	Right-handed alpha
Helix 78	AI6	G	63	78	Right-handed alpha
Helix 79	AI7	H	6	10	Right-handed 310
Helix 80	AI8	H	11	25	Right-handed alpha
Helix 81	AI9	H	29	45	Right-handed alpha
Helix 82	AJ1	H	63	75	Right-handed alpha

There are 25 sheets in PDB entry 5EW5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	284	290	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	194	211	parallel
Strand 6	A	179	191	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	94	96	first strand
Strand 2	A	155	161	anti-parallel
Strand 3	A	284	290	anti-parallel
Strand 4	A	268	274	anti-parallel
Strand 5	A	194	211	parallel
Strand 6	A	133	136	anti-parallel
Strand 7	A	258	259	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	104	first strand
Strand 2	A	230	233	parallel
Strand 3	A	221	224	anti-parallel
Strand 4	A	213	214	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	249	250	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	457	458	first strand
Strand 2	A	494	495	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	480	481	first strand
Strand 2	A	567	570	anti-parallel
Strand 3	A	548	551	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	94	96	first strand
Strand 2	B	155	161	anti-parallel
Strand 3	B	284	290	anti-parallel
Strand 4	B	268	274	anti-parallel
Strand 5	B	205	211	parallel
Strand 6	B	179	182	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	231	235	parallel
Strand 3	B	220	223	anti-parallel
Strand 4	B	213	214	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	133	140	anti-parallel
Strand 4	B	249	250	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	185	191	first strand
Strand 2	B	194	201	anti-parallel
Strand 3	B	133	140	anti-parallel
Strand 4	B	258	259	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	457	458	first strand
Strand 2	B	494	495	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	480	481	first strand
Strand 2	B	567	570	anti-parallel
Strand 3	B	548	551	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	88	90	first strand
Strand 2	C	103	112	parallel
Strand 3	C	230	235	parallel
Strand 4	C	221	224	anti-parallel
Strand 5	C	213	214	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	94	96	first strand
Strand 2	C	155	161	anti-parallel
Strand 3	C	284	289	anti-parallel
Strand 4	C	268	274	anti-parallel
Strand 5	C	205	211	parallel
Strand 6	C	179	182	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	185	186	first strand
Strand 2	C	198	201	anti-parallel
Strand 3	C	133	136	anti-parallel
Strand 4	C	258	259	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	139	140	first strand
Strand 2	C	249	250	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	189	191	first strand
Strand 2	C	194	196	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	457	458	first strand
Strand 2	C	494	495	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	480	481	first strand
Strand 2	C	567	570	anti-parallel
Strand 3	C	548	551	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	88	90	first strand
Strand 2	D	103	112	parallel
Strand 3	D	230	236	parallel
Strand 4	D	221	224	anti-parallel
Strand 5	D	213	214	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	94	96	first strand
Strand 2	D	155	161	anti-parallel
Strand 3	D	284	290	anti-parallel
Strand 4	D	268	274	anti-parallel
Strand 5	D	205	211	parallel
Strand 6	D	179	182	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	191	first strand
Strand 2	D	194	201	anti-parallel
Strand 3	D	133	140	anti-parallel
Strand 4	D	249	250	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	185	191	first strand
Strand 2	D	194	201	anti-parallel
Strand 3	D	133	140	anti-parallel
Strand 4	D	258	259	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	457	458	first strand
Strand 2	D	494	495	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	480	481	first strand
Strand 2	D	567	570	anti-parallel
Strand 3	D	548	551	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EW5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EW5