Analysis of interatomic Contacts of Structural Units in PDB entry:
5EWP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EWP entry

There are 2 chains in PDB entry 5EWP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 32THR 274
B
 LEU 32THR 274
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 30 helices in PDB entry 5EWP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 49Right-handed alpha
Helix 2
AA2
A
50 58Right-handed alpha
Helix 3
AA3
A
80 94Right-handed alpha
Helix 4
AA4
A
99 108Right-handed alpha
Helix 5
AA5
A
109 119Right-handed alpha
Helix 6
AA6
A
122 137Right-handed alpha
Helix 7
AA7
A
140 150Right-handed alpha
Helix 8
AA8
A
152 160Right-handed alpha
Helix 9
AA9
A
164 180Right-handed alpha
Helix 10
AB1
A
182 192Right-handed alpha
Helix 11
AB2
A
193 201Right-handed alpha
Helix 12
AB3
A
214 228Right-handed alpha
Helix 13
AB4
A
235 244Right-handed alpha
Helix 14
AB5
A
246 255Right-handed alpha
Helix 15
AB6
A
259 274Right-handed alpha
Helix 16
AB7
B
36 48Right-handed alpha
Helix 17
AB8
B
50 58Right-handed alpha
Helix 18
AB9
B
80 94Right-handed alpha
Helix 19
AC1
B
99 108Right-handed alpha
Helix 20
AC2
B
109 118Right-handed alpha
Helix 21
AC3
B
122 137Right-handed alpha
Helix 22
AC4
B
140 150Right-handed alpha
Helix 23
AC5
B
152 160Right-handed alpha
Helix 24
AC6
B
164 180Right-handed alpha
Helix 25
AC7
B
182 192Right-handed alpha
Helix 26
AC8
B
193 201Right-handed alpha
Helix 27
AC9
B
214 228Right-handed alpha
Helix 28
AD1
B
235 244Right-handed alpha
Helix 29
AD2
B
246 255Right-handed alpha
Helix 30
AD3
B
259 274Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 5EWP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
229 230first strand
Strand 2
A
233 234anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
229 230first strand
Strand 2
B
233 234anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il