Analysis of interatomic Contacts of Structural Units in PDB entry:
5EWQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EWQ entry

There are 3 chains in PDB entry 5EWQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 32LEU 536
B
 PRO 32LEU 536
C
 PRO 32ARG 359
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 61 helices in PDB entry 5EWQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 52Right-handed alpha
Helix 2
AA2
A
57 69Right-handed alpha
Helix 3
AA3
A
72 82Right-handed alpha
Helix 4
AA4
A
86 102Right-handed alpha
Helix 5
AA5
A
117 128Right-handed alpha
Helix 6
AA6
A
128 133Right-handed alpha
Helix 7
AA7
A
172 179Right-handed alpha
Helix 8
AA8
A
192 197Right-handed alpha
Helix 9
AA9
A
228 237Right-handed alpha
Helix 10
AB1
A
252 259Right-handed alpha
Helix 11
AB2
A
292 304Right-handed alpha
Helix 12
AB3
A
310 316Right-handed 310
Helix 13
AB4
A
351 365Right-handed alpha
Helix 14
AB5
A
382 401Right-handed alpha
Helix 15
AB6
A
408 418Right-handed alpha
Helix 16
AB7
A
419 424Right-handed alpha
Helix 17
AB8
A
428 436Right-handed alpha
Helix 18
AB9
A
440 461Right-handed alpha
Helix 19
AC1
A
479 486Right-handed alpha
Helix 20
AC2
A
513 527Right-handed alpha
Helix 21
AC3
B
42 53Right-handed alpha
Helix 22
AC4
B
57 69Right-handed alpha
Helix 23
AC5
B
72 83Right-handed alpha
Helix 24
AC6
B
86 102Right-handed alpha
Helix 25
AC7
B
117 128Right-handed alpha
Helix 26
AC8
B
128 133Right-handed alpha
Helix 27
AC9
B
172 179Right-handed alpha
Helix 28
AD1
B
180 182Right-handed 310
Helix 29
AD2
B
192 197Right-handed alpha
Helix 30
AD3
B
228 237Right-handed alpha
Helix 31
AD4
B
252 259Right-handed alpha
Helix 32
AD5
B
292 304Right-handed alpha
Helix 33
AD6
B
310 316Right-handed 310
Helix 34
AD7
B
351 366Right-handed alpha
Helix 35
AD8
B
382 401Right-handed alpha
Helix 36
AD9
B
408 418Right-handed alpha
Helix 37
AE1
B
419 424Right-handed alpha
Helix 38
AE2
B
428 436Right-handed alpha
Helix 39
AE3
B
440 464Right-handed alpha
Helix 40
AE4
B
479 486Right-handed alpha
Helix 41
AE5
B
513 529Right-handed alpha
Helix 42
AE6
C
42 52Right-handed alpha
Helix 43
AE7
C
57 69Right-handed alpha
Helix 44
AE8
C
72 80Right-handed alpha
Helix 45
AE9
C
86 102Right-handed alpha
Helix 46
AF1
C
117 128Right-handed alpha
Helix 47
AF2
C
128 133Right-handed alpha
Helix 48
AF3
C
172 179Right-handed alpha
Helix 49
AF4
C
192 197Right-handed alpha
Helix 50
AF5
C
228 237Right-handed alpha
Helix 51
AF6
C
252 259Right-handed alpha
Helix 52
AF7
C
292 304Right-handed alpha
Helix 53
AF8
C
312 316Right-handed 310
Helix 54
AF9
C
351 365Right-handed alpha
Helix 55
AG1
C
382 401Right-handed alpha
Helix 56
AG2
C
408 418Right-handed alpha
Helix 57
AG3
C
419 424Right-handed alpha
Helix 58
AG4
C
428 436Right-handed alpha
Helix 59
AG5
C
440 464Right-handed alpha
Helix 60
AG6
C
479 486Right-handed alpha
Helix 61
AG7
C
513 529Right-handed alpha
Back to top of page

There are 6 sheets in PDB entry 5EWQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
111 114first strand
Strand 2
A
184 189anti-parallel
Strand 3
A
141 145parallel
Strand 4
A
242 246parallel
Strand 5
A
286 290anti-parallel
Strand 6
A
262 265anti-parallel
Strand 7
A
489 496anti-parallel
Strand 8
A
502 508anti-parallel
Strand 9
A
470 474anti-parallel
Strand 10
A
337 340parallel
Strand 11
A
368 370parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 207first strand
Strand 2
A
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
111 114first strand
Strand 2
B
184 189anti-parallel
Strand 3
B
141 145parallel
Strand 4
B
242 247parallel
Strand 5
B
285 290anti-parallel
Strand 6
B
262 265anti-parallel
Strand 7
B
489 496anti-parallel
Strand 8
B
502 508anti-parallel
Strand 9
B
470 474anti-parallel
Strand 10
B
337 340parallel
Strand 11
B
368 369parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
206 207first strand
Strand 2
B
211 212anti-parallel
Back to list of sheets
Back to top of page

There are 11 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
111 114first strand
Strand 2
C
184 189anti-parallel
Strand 3
C
141 145parallel
Strand 4
C
242 246parallel
Strand 5
C
286 290anti-parallel
Strand 6
C
262 265anti-parallel
Strand 7
C
489 496anti-parallel
Strand 8
C
502 508anti-parallel
Strand 9
C
470 474anti-parallel
Strand 10
C
337 340parallel
Strand 11
C
368 370parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
206 207first strand
Strand 2
C
211 212anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il