Analysis of interatomic Contacts of Structural Units in PDB entry:
5EX8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EX8 entry

There is 1 chain in PDB entry 5EX8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ILE -22TRP 391
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5EX8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-14 -9Right-handed alpha
Helix 2
AA2
A
-3 13Right-handed alpha
Helix 3
AA3
A
22 31Right-handed alpha
Helix 4
AA4
A
53 63Right-handed alpha
Helix 5
AA5
A
68 72Right-handed 310
Helix 6
AA6
A
84 88Right-handed 310
Helix 7
AA7
A
91 101Right-handed alpha
Helix 8
AA8
A
102 104Right-handed 310
Helix 9
AA9
A
105 131Right-handed alpha
Helix 10
AB1
A
136 140Right-handed alpha
Helix 11
AB2
A
140 153Right-handed alpha
Helix 12
AB3
A
156 158Right-handed 310
Helix 13
AB4
A
159 173Right-handed alpha
Helix 14
AB5
A
175 198Right-handed alpha
Helix 15
AB6
A
204 214Right-handed alpha
Helix 16
AB7
A
215 217Right-handed 310
Helix 17
AB8
A
218 231Right-handed alpha
Helix 18
AB9
A
231 251Right-handed alpha
Helix 19
AC1
A
251 261Right-handed alpha
Helix 20
AC2
A
262 265Right-handed 310
Helix 21
AC3
A
267 277Right-handed alpha
Helix 22
AC4
A
307 313Right-handed alpha
Helix 23
AC5
A
344 363Right-handed alpha
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There are 4 sheets in PDB entry 5EX8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
16 17first strand
Strand 2
A
20 21anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
34 39first strand
Strand 2
A
47 51anti-parallel
Strand 3
A
303 306parallel
Strand 4
A
285 287anti-parallel
Strand 5
A
66 67anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
134 135first strand
Strand 2
A
388 390anti-parallel
Strand 3
A
367 368anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 293first strand
Strand 2
A
296 298anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il