Analysis of interatomic Contacts of Structural Units in PDB entry:
5EXV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5EXV entry

There are 6 chains in PDB entry 5EXV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 3	HIS 165
B	MET 1	GLN 167
C	MET 1	HIS 165
D	GLU 2	LYS 166
E	MET 1	GLN 167
F	MET 1	GLN 167

There are 44 helices in PDB entry 5EXV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	3	8	Right-handed alpha
Helix 2	AA2	A	10	15	Right-handed alpha
Helix 3	AA3	A	19	28	Right-handed alpha
Helix 4	AA4	A	30	37	Right-handed alpha
Helix 5	AA5	A	51	62	Right-handed alpha
Helix 6	AA6	A	105	109	Right-handed 310
Helix 7	AA7	A	151	162	Right-handed alpha
Helix 8	AA8	B	3	15	Right-handed alpha
Helix 9	AA9	B	19	28	Right-handed alpha
Helix 10	AB1	B	30	38	Right-handed alpha
Helix 11	AB2	B	39	41	Right-handed 310
Helix 12	AB3	B	50	62	Right-handed alpha
Helix 13	AB4	B	105	109	Right-handed 310
Helix 14	AB5	B	151	166	Right-handed alpha
Helix 15	AB6	C	3	8	Right-handed alpha
Helix 16	AB7	C	8	14	Right-handed alpha
Helix 17	AB8	C	19	27	Right-handed alpha
Helix 18	AB9	C	30	37	Right-handed alpha
Helix 19	AC1	C	39	41	Right-handed 310
Helix 20	AC2	C	48	62	Right-handed alpha
Helix 21	AC3	C	105	107	Right-handed 310
Helix 22	AC4	C	155	165	Right-handed alpha
Helix 23	AC5	D	3	14	Right-handed alpha
Helix 24	AC6	D	19	27	Right-handed alpha
Helix 25	AC7	D	30	38	Right-handed alpha
Helix 26	AC8	D	39	41	Right-handed 310
Helix 27	AC9	D	50	58	Right-handed alpha
Helix 28	AD1	D	59	61	Right-handed 310
Helix 29	AD2	D	105	109	Right-handed 310
Helix 30	AD3	D	151	165	Right-handed alpha
Helix 31	AD4	E	3	15	Right-handed alpha
Helix 32	AD5	E	19	28	Right-handed alpha
Helix 33	AD6	E	30	38	Right-handed alpha
Helix 34	AD7	E	39	41	Right-handed 310
Helix 35	AD8	E	50	62	Right-handed alpha
Helix 36	AD9	E	105	109	Right-handed 310
Helix 37	AE1	E	151	166	Right-handed alpha
Helix 38	AE2	F	3	15	Right-handed alpha
Helix 39	AE3	F	19	28	Right-handed alpha
Helix 40	AE4	F	30	38	Right-handed alpha
Helix 41	AE5	F	39	41	Right-handed 310
Helix 42	AE6	F	50	62	Right-handed alpha
Helix 43	AE7	F	105	109	Right-handed 310
Helix 44	AE8	F	151	166	Right-handed alpha

There are 8 sheets in PDB entry 5EXV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	43	47	first strand
Strand 2	A	111	116	anti-parallel
Strand 3	A	125	130	anti-parallel
Strand 4	A	136	142	anti-parallel
Strand 5	A	63	70	anti-parallel
Strand 6	A	73	80	anti-parallel
Strand 7	B	101	104	anti-parallel
Strand 8	B	90	94	anti-parallel
Strand 9	B	83	87	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	90	92	anti-parallel
Strand 3	A	101	104	anti-parallel
Strand 4	B	73	80	anti-parallel
Strand 5	B	63	70	anti-parallel
Strand 6	B	136	142	anti-parallel
Strand 7	B	125	130	anti-parallel
Strand 8	B	111	116	anti-parallel
Strand 9	B	43	47	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	47	first strand
Strand 2	C	109	116	anti-parallel
Strand 3	C	125	131	anti-parallel
Strand 4	C	136	142	anti-parallel
Strand 5	C	63	70	anti-parallel
Strand 6	C	73	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	83	87	first strand
Strand 2	C	90	94	anti-parallel
Strand 3	C	103	104	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	47	first strand
Strand 2	D	111	116	anti-parallel
Strand 3	D	125	130	anti-parallel
Strand 4	D	136	142	anti-parallel
Strand 5	D	63	70	anti-parallel
Strand 6	D	73	80	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	84	87	first strand
Strand 2	D	90	93	anti-parallel
Strand 3	D	103	104	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	43	47	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	126	130	anti-parallel
Strand 4	E	136	142	anti-parallel
Strand 5	E	63	70	anti-parallel
Strand 6	E	73	80	anti-parallel
Strand 7	F	101	104	anti-parallel
Strand 8	F	90	94	anti-parallel
Strand 9	F	83	87	anti-parallel

Back to list of sheets
Back to top of page

There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	87	first strand
Strand 2	E	90	94	anti-parallel
Strand 3	E	101	104	anti-parallel
Strand 4	F	73	80	anti-parallel
Strand 5	F	63	70	anti-parallel
Strand 6	F	136	142	anti-parallel
Strand 7	F	126	130	anti-parallel
Strand 8	F	111	115	anti-parallel
Strand 9	F	43	47	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5EXV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5EXV