Analysis of interatomic Contacts of Structural Units in PDB entry:
5EY1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5EY1 entry

There are 2 chains in PDB entry 5EY1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 257
B
 MET 1ASP 168
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5EY1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
2 17Right-handed alpha
Helix 2
AA2
A
23 36Right-handed alpha
Helix 3
AA3
A
54 58Right-handed 310
Helix 4
AA4
A
59 69Right-handed alpha
Helix 5
AA5
A
72 80Right-handed alpha
Helix 6
AA6
A
99 106Right-handed 310
Helix 7
AA7
A
136 179Right-handed alpha
Helix 8
AA8
A
180 191Right-handed alpha
Helix 9
AA9
A
213 227Right-handed alpha
Helix 10
AB1
A
248 255Right-handed alpha
Helix 11
AB2
B
2 17Right-handed alpha
Helix 12
AB3
B
23 36Right-handed alpha
Helix 13
AB4
B
54 58Right-handed 310
Helix 14
AB5
B
59 69Right-handed alpha
Helix 15
AB6
B
72 81Right-handed alpha
Helix 16
AB7
B
99 103Right-handed 310
Helix 17
AB8
B
136 166Right-handed alpha
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There are 3 sheets in PDB entry 5EY1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 52first strand
Strand 2
A
38 43anti-parallel
Strand 3
A
121 130anti-parallel
Strand 4
A
110 118anti-parallel
Strand 5
A
86 89anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
230 232first strand
Strand 2
A
242 244anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 52first strand
Strand 2
B
38 43anti-parallel
Strand 3
B
121 130anti-parallel
Strand 4
B
110 118anti-parallel
Strand 5
B
86 89anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il